CuGenDBv2

Gene ID	CmoCh19G001700
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Poly(A)-specific ribonuclease
Genome location	Cmo_Chr19:1065547..1066099
RNA-Seq Expression	CmoCh19G001700
Synteny	CmoCh19G001700
Gene Ontology terms	GO:0016070 - RNA metabolic process (biological process) GO:0005622 - intracellular (cellular component) GO:0030014 - CCR4-NOT complex (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022963785.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]

1.7e-37

65.97

Show/hide

Query:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL
        MEGVYSL+SF   KGFN N L SY             +L +    RWITFHG YDIAYL K TNI CMPTSMSIFA T  HLLGTVTDLK MAR S+YL 
Subjt:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL

Query:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM
        NGNLGLKKL KLLQVN   TAHFA SDS LTASVYAKM++  K+
Subjt:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM

XP_022967644.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

5.3e-39

68.06

Show/hide

Query:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL
        MEGVYSL+SF   KGFN N L S              +L +    RWITFHG YDIAYL KFTNI+CMPTSMS FA    HLLGTVTDLK MARYSDYLL
Subjt:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL

Query:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM
        NGNLGLKKL K+LQVN I TAHFA SDSFLTASVYAKMR+  K+
Subjt:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM

XP_022967646.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

2.6e-38

67.36

Show/hide

Query:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL
        MEGVYSL+SF   KGFN N L S              +L +    RWITFHG YDIAYL KFTNI+CMPTSMS FA    HLLGTVTDLK MARYSDYLL
Subjt:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL

Query:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM
        NGNLGLKKL K+LQVN I TAHFA SDS LTASVYAKMR+  K+
Subjt:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM

XP_022967647.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

2.6e-38

67.36

Show/hide

Query:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL
        MEGVYSL+SF   KGFN N L S              +L +    RWITFHG YDIAYL KFTNI+CMPTSMS FA    HLLGTVTDLK MARYSDYLL
Subjt:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL

Query:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM
        NGNLGLKKL K+LQVN I TAHFA SDS LTASVYAKMR+  K+
Subjt:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM

XP_022975238.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

1.5e-38

67.36

Show/hide

Query:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL
        MEGVYSL+SF   KGFN N L S              +L +    RWITFHG YDIAYL KFT+I+CMPTSMSIFA    HLLGTVTDLK MARYSDYLL
Subjt:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL

Query:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM
        NGNLGLKKL K+LQVN I TAHFA SDS LTASVYAKMR+  K+
Subjt:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM

TrEMBL top hits

e value

%identity

Alignment

A0A6J1HIZ7 Poly(A)-specific ribonuclease

8.3e-38

65.97

Show/hide

Query:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL
        MEGVYSL+SF   KGFN N L SY             +L +    RWITFHG YDIAYL K TNI CMPTSMSIFA T  HLLGTVTDLK MAR S+YL 
Subjt:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL

Query:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM
        NGNLGLKKL KLLQVN   TAHFA SDS LTASVYAKM++  K+
Subjt:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM

A0A6J1HRD6 Poly(A)-specific ribonuclease

1.3e-38

67.36

Show/hide

Query:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL
        MEGVYSL+SF   KGFN N L S              +L +    RWITFHG YDIAYL KFTNI+CMPTSMS FA    HLLGTVTDLK MARYSDYLL
Subjt:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL

Query:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM
        NGNLGLKKL K+LQVN I TAHFA SDS LTASVYAKMR+  K+
Subjt:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM

A0A6J1HSR3 Poly(A)-specific ribonuclease

1.3e-38

67.36

Show/hide

Query:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL
        MEGVYSL+SF   KGFN N L S              +L +    RWITFHG YDIAYL KFTNI+CMPTSMS FA    HLLGTVTDLK MARYSDYLL
Subjt:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL

Query:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM
        NGNLGLKKL K+LQVN I TAHFA SDS LTASVYAKMR+  K+
Subjt:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM

A0A6J1HXB4 Poly(A)-specific ribonuclease

2.6e-39

68.06

Show/hide

Query:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL
        MEGVYSL+SF   KGFN N L S              +L +    RWITFHG YDIAYL KFTNI+CMPTSMS FA    HLLGTVTDLK MARYSDYLL
Subjt:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL

Query:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM
        NGNLGLKKL K+LQVN I TAHFA SDSFLTASVYAKMR+  K+
Subjt:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM

A0A6J1IIN1 Poly(A)-specific ribonuclease

7.5e-39

67.36

Show/hide

Query:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL
        MEGVYSL+SF   KGFN N L S              +L +    RWITFHG YDIAYL KFT+I+CMPTSMSIFA    HLLGTVTDLK MARYSDYLL
Subjt:  MEGVYSLNSF---KGFNSNRLSSY-------------LLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLL

Query:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM
        NGNLGLKKL K+LQVN I TAHFA SDS LTASVYAKMR+  K+
Subjt:  NGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMRLSAKM

SwissProt top hits

e value

%identity

Alignment

O64773 Probable CCR4-associated factor 1 homolog 5

8.6e-08

40.43

Show/hide

Query:  RWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGT-VTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM
        RW+TF G YD AYL K      +P +   F  T   LLG  V D+K+MA      L+   GL+++  +LQ+  +  AH A SDS LTA V+ K+
Subjt:  RWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGT-VTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM

Q9C6M9 Putative CCR4-associated factor 1 homolog 4

6.2e-06

39.36

Show/hide

Query:  WITFHGWYDIAYLTK-FTNIMCMPTSMSIFATTDTHLLGT-VTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM
        W+ F G YD AYL K  T    +P +   F  T   LLG  V D+K++A  S   L+   GL+++  +LQ+  +  AH A SDS LTA V+ K+
Subjt:  WITFHGWYDIAYLTK-FTNIMCMPTSMSIFATTDTHLLGT-VTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM

Q9LXM4 Putative CCR4-associated factor 1 homolog 8

1.6e-09

42.39

Show/hide

Query:  WITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM
        W+TFHG YDIAYL K      +P +   F+     +LG+V DLK MA   +  L+  LGL+ L     +N + TAH A S++ LTA V+AK+
Subjt:  WITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM

Q9SFX6 Putative CCR4-associated factor 1 homolog 3

6.2e-06

39.36

Show/hide

Query:  WITFHGWYDIAYLTK-FTNIMCMPTSMSIFATTDTHLLGT-VTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM
        W+ F G YD AYL K  T    +P +   F  T   LLG  V D+K++A  S   L+   GL+++  +LQ+  +  AH A SDS LTA V+ K+
Subjt:  WITFHGWYDIAYLTK-FTNIMCMPTSMSIFATTDTHLLGT-VTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM

Q9SHJ0 Probable CCR4-associated factor 1 homolog 1

7.8e-09

39.78

Show/hide

Query:  WITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMR
        ++TF G YD AY     N   +P +   FAT    + G V D K MA + +  L  +LGL KL +LLQ+  +  AH A SDS +TA V+ K++
Subjt:  WITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMR

Arabidopsis top hits

e value

%identity

Alignment

AT1G06450.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

5.5e-10

39.78

Show/hide

Query:  WITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMR
        ++TF G YD AY     N   +P +   FAT    + G V D K MA + +  L  +LGL KL +LLQ+  +  AH A SDS +TA V+ K++
Subjt:  WITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKMR

AT1G27820.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

4.4e-07

39.36

Show/hide

Query:  WITFHGWYDIAYLTK-FTNIMCMPTSMSIFATTDTHLLGT-VTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM
        W+ F G YD AYL K  T    +P +   F  T   LLG  V D+K++A  S   L+   GL+++  +LQ+  +  AH A SDS LTA V+ K+
Subjt:  WITFHGWYDIAYLTK-FTNIMCMPTSMSIFATTDTHLLGT-VTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM

AT1G27890.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

4.4e-07

39.36

Show/hide

Query:  WITFHGWYDIAYLTK-FTNIMCMPTSMSIFATTDTHLLGT-VTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM
        W+ F G YD AYL K  T    +P +   F  T   LLG  V D+K++A  S   L+   GL+++  +LQ+  +  AH A SDS LTA V+ K+
Subjt:  WITFHGWYDIAYLTK-FTNIMCMPTSMSIFATTDTHLLGT-VTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM

AT1G61470.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

6.1e-09

40.43

Show/hide

Query:  RWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGT-VTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM
        RW+TF G YD AYL K      +P +   F  T   LLG  V D+K+MA      L+   GL+++  +LQ+  +  AH A SDS LTA V+ K+
Subjt:  RWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGT-VTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM

AT3G44240.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

1.1e-10

42.39

Show/hide

Query:  WITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM
        W+TFHG YDIAYL K      +P +   F+     +LG+V DLK MA   +  L+  LGL+ L     +N + TAH A S++ LTA V+AK+
Subjt:  WITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQSDSFLTASVYAKM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAGGTGTTTATTCACTCAATTCATTTAAGGGATTTAATTCCAATAGATTGAGTAGCTATCTCCTTGATAATTTGGTAGAAGGGAGATGGATAACATTTCATGGATG
GTATGACATCGCCTATTTAACGAAGTTTACCAACATAATGTGCATGCCTACGTCCATGTCTATCTTCGCCACCACTGATACACATCTATTAGGAACAGTCACCGACCTCA
AACGTATGGCTCGGTACTCCGACTACCTACTCAATGGCAACCTAGGCTTAAAAAAACTGGTGAAGCTGCTCCAAGTTAATGGCATTGTTACTGCCCACTTTGCTCAGTCT
GACAGTTTTCTTACTGCATCAGTTTATGCCAAGATGAGGTTATCTGCCAAGATGAGGGTTATCGACGACCAGTTGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEGVYSLNSFKGFNSNRLSSYLLDNLVEGRWITFHGWYDIAYLTKFTNIMCMPTSMSIFATTDTHLLGTVTDLKRMARYSDYLLNGNLGLKKLVKLLQVNGIVTAHFAQS
DSFLTASVYAKMRLSAKMRVIDDQL

CmoCh19G001700 (gene) of Cucurbita moschata (Rifu) v1 genome