CuGenDBv2

Gene ID	CmoCh19G001730
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Poly(A)-specific ribonuclease
Genome location	Cmo_Chr19:1079789..1080702
RNA-Seq Expression	CmoCh19G001730
Synteny	CmoCh19G001730
Gene Ontology terms	GO:0006402 - mRNA catabolic process (biological process) GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0030014 - CCR4-NOT complex (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022967644.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

2.1e-23

79.73

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Query:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL
        R  +IQRWITFHG Y IAYL KFTNI+CMPTS+S FA    HLLGTVTDLKHMARYSDYLLNG LGLKKLAK+L
Subjt:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL

XP_022967646.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

2.1e-23

79.73

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Query:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL
        R  +IQRWITFHG Y IAYL KFTNI+CMPTS+S FA    HLLGTVTDLKHMARYSDYLLNG LGLKKLAK+L
Subjt:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL

XP_022967647.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

2.1e-23

79.73

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Query:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL
        R  +IQRWITFHG Y IAYL KFTNI+CMPTS+S FA    HLLGTVTDLKHMARYSDYLLNG LGLKKLAK+L
Subjt:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL

XP_022975238.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

1.2e-23

79.73

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Query:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL
        R  +IQRWITFHG Y IAYL KFT+I+CMPTS+SIFA    HLLGTVTDLKHMARYSDYLLNG LGLKKLAK+L
Subjt:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL

XP_022975694.1 putative CCR4-associated factor 1 homolog 8, partial [Cucurbita maxima]

1.2e-23

79.73

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Query:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL
        R  +IQRWITFHG Y IAYL KFT+I+CMPTS+SIFA    HLLGTVTDLKHMARYSDYLLNG LGLKKLAK+L
Subjt:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1HRD6 Poly(A)-specific ribonuclease

1.0e-23

79.73

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Query:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL
        R  +IQRWITFHG Y IAYL KFTNI+CMPTS+S FA    HLLGTVTDLKHMARYSDYLLNG LGLKKLAK+L
Subjt:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL

A0A6J1HSR3 Poly(A)-specific ribonuclease

1.0e-23

79.73

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Query:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL
        R  +IQRWITFHG Y IAYL KFTNI+CMPTS+S FA    HLLGTVTDLKHMARYSDYLLNG LGLKKLAK+L
Subjt:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL

A0A6J1HXB4 Poly(A)-specific ribonuclease

1.0e-23

79.73

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Query:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL
        R  +IQRWITFHG Y IAYL KFTNI+CMPTS+S FA    HLLGTVTDLKHMARYSDYLLNG LGLKKLAK+L
Subjt:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL

A0A6J1IIN1 Poly(A)-specific ribonuclease

5.9e-24

79.73

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Query:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL
        R  +IQRWITFHG Y IAYL KFT+I+CMPTS+SIFA    HLLGTVTDLKHMARYSDYLLNG LGLKKLAK+L
Subjt:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL

A0A6J1ILC5 Poly(A)-specific ribonuclease

5.9e-24

79.73

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Query:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL
        R  +IQRWITFHG Y IAYL KFT+I+CMPTS+SIFA    HLLGTVTDLKHMARYSDYLLNG LGLKKLAK+L
Subjt:  RVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLAKLL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G44240.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

2.3e-04

42.19

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Query:  WITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLA
        W+TFHG Y IAYL K      +P +   F+     +LG+V DLK MA   +  L+  LGL+ LA
Subjt:  WITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKHMARYSDYLLNGPLGLKKLA

Sequences

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CDS sequence

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ATGGTGAAAATTATTGGAAAAGGGGCACATGGGCCAAGAAGCTCTACGCAATTCTCACGATCACGGTCGATCATGGTTCAACTCGATATCGTGAAAGTGAACCGAAGAAT
TTCTGGATCAGATACAAGTTATGAACCAGTATCTATCAGAGTTCCCAATTGTGGCCATGGATATCGAGTTTCAAAAATACAGAGATGGATAACATTTCATGGATGGTATG
GCATCGCCTATTTAACGAAGTTTACCAACATAATGTGCATGCCTACGTCCATATCTATCTTCGCCACCACTGATACACATCTATTAGGAACAGTCACCGACCTGAAACAT
ATGGCTCGGTACTCCGACTACCTACTCAATGGCCCCCTAGGCTTAAAAAAACTGGCGAAGCTGCTCCTGACATTGCTACTGCCCACTTTGCTCGGTCTGACAGTTTTCTT
ACCGCATCAGTTTATGCCAATATGA

mRNA sequence

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Protein sequence

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MVKIIGKGAHGPRSSTQFSRSRSIMVQLDIVKVNRRISGSDTSYEPVSIRVPNCGHGYRVSKIQRWITFHGWYGIAYLTKFTNIMCMPTSISIFATTDTHLLGTVTDLKH
MARYSDYLLNGPLGLKKLAKLLLTLLLPTLLGLTVFLPHQFMPI

CmoCh19G001730 (gene) of Cucurbita moschata (Rifu) v1 genome