CuGenDBv2

Gene ID	CmoCh19G001740
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Poly(A)-specific ribonuclease
Genome location	Cmo_Chr19:1091961..1092284
RNA-Seq Expression	CmoCh19G001740
Synteny	CmoCh19G001740
Gene Ontology terms	GO:0006402 - mRNA catabolic process (biological process) GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0030014 - CCR4-NOT complex (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022967644.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

8.6e-10

81.25

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Query:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK
        MKFTNI+CMPTS S FA    HLL TVTDLKHMARYSDYLLN NLGLK
Subjt:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK

XP_022967646.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

8.6e-10

81.25

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Query:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK
        MKFTNI+CMPTS S FA    HLL TVTDLKHMARYSDYLLN NLGLK
Subjt:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK

XP_022967647.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

8.6e-10

81.25

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Query:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK
        MKFTNI+CMPTS S FA    HLL TVTDLKHMARYSDYLLN NLGLK
Subjt:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK

XP_022975238.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

5.0e-10

81.25

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Query:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK
        MKFT+I+CMPTS SIFA    HLL TVTDLKHMARYSDYLLN NLGLK
Subjt:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK

XP_022975694.1 putative CCR4-associated factor 1 homolog 8, partial [Cucurbita maxima]

5.0e-10

81.25

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Query:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK
        MKFT+I+CMPTS SIFA    HLL TVTDLKHMARYSDYLLN NLGLK
Subjt:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1HRD6 Poly(A)-specific ribonuclease

4.2e-10

81.25

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Query:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK
        MKFTNI+CMPTS S FA    HLL TVTDLKHMARYSDYLLN NLGLK
Subjt:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK

A0A6J1HSR3 Poly(A)-specific ribonuclease

4.2e-10

81.25

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Query:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK
        MKFTNI+CMPTS S FA    HLL TVTDLKHMARYSDYLLN NLGLK
Subjt:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK

A0A6J1HXB4 Poly(A)-specific ribonuclease

4.2e-10

81.25

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Query:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK
        MKFTNI+CMPTS S FA    HLL TVTDLKHMARYSDYLLN NLGLK
Subjt:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK

A0A6J1IIN1 Poly(A)-specific ribonuclease

2.4e-10

81.25

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Query:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK
        MKFT+I+CMPTS SIFA    HLL TVTDLKHMARYSDYLLN NLGLK
Subjt:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK

A0A6J1ILC5 Poly(A)-specific ribonuclease

2.4e-10

81.25

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Query:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK
        MKFT+I+CMPTS SIFA    HLL TVTDLKHMARYSDYLLN NLGLK
Subjt:  MKFTNIMCMPTS-SIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGTTTACCAACATAATGTGCATGCCTACGTCGTCTATCTTCGCCACCACTGATACACATCTATTAAGAACAGTCACCGACCTCAAACATATGGCTCGGTACTCTGA
CTATCTTCTCAATGACAACTTAGGCTTAAAAAACTGTCGAAGCTGCTCCAAGTTAATGGCATTGGTACTGCCCACTTTGCTGGATTACGATAACCCATTCAAGATTAACG
ACGACCAATTATAA

mRNA sequence

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Protein sequence

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MKFTNIMCMPTSSIFATTDTHLLRTVTDLKHMARYSDYLLNDNLGLKNCRSCSKLMALVLPTLLDYDNPFKINDDQL

CmoCh19G001740 (gene) of Cucurbita moschata (Rifu) v1 genome