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CmoCh19G002960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G002960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein SODIUM POTASSIUM ROOT DEFECTIVE 1-like
Genome locationCmo_Chr19:2188115..2189095
RNA-Seq ExpressionCmoCh19G002960
SyntenyCmoCh19G002960
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011417.1 Protein SODIUM POTASSIUM ROOT DEFECTIVE 2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-44100Show/hide
Query:  MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK
        MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK
Subjt:  MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK

XP_022963840.1 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like [Cucurbita moschata]5.7e-40100Show/hide
Query:  MCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK
        MCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK
Subjt:  MCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK

XP_022967633.1 heavy metal-associated isoprenylated plant protein 35-like [Cucurbita maxima]4.2e-3588.78Show/hide
Query:  MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK
        MKKLGGFMC SPAATAVCIPADPRSAVVS  SLARAN+LK  N NG RVRLV+NAVKYSKL KSPSAGTTNDVKKPV LMLSSPPPPPENVFHVVVMK
Subjt:  MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK

XP_023511457.1 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like [Cucurbita pepo subsp. pepo]1.2e-3795.6Show/hide
Query:  MCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK
        MC SPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVR VSNAVKYSKL KSPS GTTNDVKKPVTLMLSSPPPPPENVFHVVVMK
Subjt:  MCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK

XP_038888352.1 heavy metal-associated isoprenylated plant protein 35-like [Benincasa hispida]2.4e-2269.9Show/hide
Query:  MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSP-----SAGTTNDVKKPVTLMLSSPPPPPENVFHVV
        MKKLGGFMC SPAATAVCIPADPRSAVVSRR LARA+ + NAN+  NR RLVSNAVKYSKL +S      S  T  ++KK V +MLS   PPPENVFHVV
Subjt:  MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSP-----SAGTTNDVKKPVTLMLSSPPPPPENVFHVV

Query:  VMK
        VM+
Subjt:  VMK

TrEMBL top hitse value%identityAlignment
A0A0A0K2I2 HMA domain-containing protein7.5e-1457.01Show/hide
Query:  MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANA-NGNR-VRLVS-NAVKYSKLRKSP------SAGTTNDVKKPVTLMLSSPPPPPENV
        MKKLGGFMC S A TAVCIP+DPRS VVSRR LAR +   N +A NGNR  R VS N VKYSKL +S       S G   ++KKP   ++ S P    NV
Subjt:  MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANA-NGNR-VRLVS-NAVKYSKLRKSP------SAGTTNDVKKPVTLMLSSPPPPPENV

Query:  FHVVVMK
        FHVVVM+
Subjt:  FHVVVMK

A0A5A7SQB0 Heavy metal-associated isoprenylated plant protein 3-like1.3e-1861.9Show/hide
Query:  MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANA-NGNRVRLVSNAVKYSKLRKSP------SAGTTNDVKKPVTLMLSSPPPPPENVFH
        MKKLGGF C S A TAVCIPADPRSAVVSRR LARA+ + N +A NGNR RLVSNAVKYSKL +S       S G   ++KKP   ++ S P    NVFH
Subjt:  MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANA-NGNRVRLVSNAVKYSKLRKSP------SAGTTNDVKKPVTLMLSSPPPPPENVFH

Query:  VVVMK
        VVVM+
Subjt:  VVVMK

A0A6J1DJK2 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like3.7e-1354.37Show/hide
Query:  KKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANG-NRVRLVSNAVKYSKLRKSPSAGTTND-----VKKPVTLMLSSPPPPPENVFHVV
        KKLGGF C SP ATAVCI A+PRSAVV  R LARA    + NANG +RVR  SN V Y +L  SPS    ++     VK+PV+ + SS    PENVF VV
Subjt:  KKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANG-NRVRLVSNAVKYSKLRKSPSAGTTND-----VKKPVTLMLSSPPPPPENVFHVV

Query:  VMK
        V++
Subjt:  VMK

A0A6J1HJ48 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like2.7e-40100Show/hide
Query:  MCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK
        MCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK
Subjt:  MCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK

A0A6J1HVM5 heavy metal-associated isoprenylated plant protein 35-like2.0e-3588.78Show/hide
Query:  MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK
        MKKLGGFMC SPAATAVCIPADPRSAVVS  SLARAN+LK  N NG RVRLV+NAVKYSKL KSPSAGTTNDVKKPV LMLSSPPPPPENVFHVVVMK
Subjt:  MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAACTAGGAGGATTCATGTGCCAATCTCCGGCCGCCACCGCAGTATGCATCCCCGCCGATCCTCGGTCCGCAGTCGTGTCAAGAAGAAGCCTGGCTAGAGCCAA
CAGCCTTAAGAATGCCAATGCCAATGGCAACCGTGTGAGGTTGGTGAGCAATGCTGTGAAGTACTCCAAGCTTCGCAAGTCTCCGAGCGCGGGAACGACGAACGACGTGA
AGAAGCCGGTGACACTTATGCTTTCCTCGCCACCGCCCCCACCGGAGAATGTCTTCCATGTGGTGGTTATGAAGCATAGATCTAGAGGCCAAGAGAGTGACTGTGATGGG
ACATATTTCACCGCTGGGTGTCTTGGAGAGTCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAACTAGGAGGATTCATGTGCCAATCTCCGGCCGCCACCGCAGTATGCATCCCCGCCGATCCTCGGTCCGCAGTCGTGTCAAGAAGAAGCCTGGCTAGAGCCAA
CAGCCTTAAGAATGCCAATGCCAATGGCAACCGTGTGAGGTTGGTGAGCAATGCTGTGAAGTACTCCAAGCTTCGCAAGTCTCCGAGCGCGGGAACGACGAACGACGTGA
AGAAGCCGGTGACACTTATGCTTTCCTCGCCACCGCCCCCACCGGAGAATGTCTTCCATGTGGTGGTTATGAAGCATAGATCTAGAGGCCAAGAGAGTGACTGTGATGGG
ACATATTTCACCGCTGGGTGTCTTGGAGAGTCTTTCTAA
Protein sequenceShow/hide protein sequence
MKKLGGFMCQSPAATAVCIPADPRSAVVSRRSLARANSLKNANANGNRVRLVSNAVKYSKLRKSPSAGTTNDVKKPVTLMLSSPPPPPENVFHVVVMKHRSRGQESDCDG
TYFTAGCLGESF