; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh19G003210 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G003210
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor bHLH160
Genome locationCmo_Chr19:2443479..2446799
RNA-Seq ExpressionCmoCh19G003210
SyntenyCmoCh19G003210
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR015660 - Achaete-scute transcription factor-related
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571714.1 hypothetical protein SDJN03_28442, partial [Cucurbita argyrosperma subsp. sororia]2.1e-5399.09Show/hide
Query:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR
        MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSM EVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR
Subjt:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR

Query:  SLLPNARRSK
        SLLPNARRSK
Subjt:  SLLPNARRSK

KAG7011438.1 Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma]6.4e-5560.09Show/hide
Query:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFS--
        MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSM EVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQL+ S  
Subjt:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFS--

Query:  -----------LRSLLPNARR------------------------------------------------------------SKAEEEGLRIIGASTVCVS
                   L+  + N +                                                              KAEEEGLRIIGASTVCVS
Subjt:  -----------LRSLLPNARR------------------------------------------------------------SKAEEEGLRIIGASTVCVS

Query:  PHHPTLTSHLHFQ
        PHHPTLTSHLHFQ
Subjt:  PHHPTLTSHLHFQ

XP_022963582.1 transcription factor bHLH160 [Cucurbita moschata]3.0e-7664.57Show/hide
Query:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR
        MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR
Subjt:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR

Query:  SLLPNARRS------------------------------------------------------------------------------------------K
        SLLPNARRS                                                                                          K
Subjt:  SLLPNARRS------------------------------------------------------------------------------------------K

Query:  AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISWLC
        AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISWLC
Subjt:  AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISWLC

XP_022967618.1 transcription factor bHLH160 [Cucurbita maxima]3.9e-6859.92Show/hide
Query:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR
        MAV PWESYYTLTDENNGEE+T LPKGGEALCGE GGSMAEVAALLGLEEDIYGGFGREN AFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR
Subjt:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR

Query:  SLLPNARRS------------------------------------------------------------------------------------------K
        SLLPNARRS                                                                                          K
Subjt:  SLLPNARRS------------------------------------------------------------------------------------------K

Query:  AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISW
        AEE+GLRIIGAS + VS HHPTLTSHLHFQMD+SVEEGDDYKSILRKRVISW
Subjt:  AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISW

XP_023553728.1 transcription factor bHLH160 [Cucurbita pepo subsp. pepo]2.8e-7462.99Show/hide
Query:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR
        MAV PWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSM EVAALLGLEEDIYGG GRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR
Subjt:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR

Query:  SLLPNARRS------------------------------------------------------------------------------------------K
        SLLPNARRS                                                                                          K
Subjt:  SLLPNARRS------------------------------------------------------------------------------------------K

Query:  AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISWLC
        AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMD+SVEEGDDYKSILRKRVISWLC
Subjt:  AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISWLC

TrEMBL top hitse value%identityAlignment
A0A0A0KGG0 BHLH domain-containing protein2.2e-3758.82Show/hide
Query:  ESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEED---IYGGFGRENAAFPPAMNANI---EPS-----NAKKEEHNARERQRRMELSQL
        E +  +    +GEE  LLP        EI GS+ E + LLGLEE+   I G   REN+   P  + N+   EPS     NAKKEEHNARERQRR++LS  
Subjt:  ESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEED---IYGGFGRENAAFPPAMNANI---EPS-----NAKKEEHNARERQRRMELSQL

Query:  YFSLRSLLPNARRSKAEEEGLRIIGASTVCVSPHHPTLTSHLHFQ-MDKSVEEGDDYKSILRKRVISWLC
        YFSLRSLLPNARRSKAE EGLRIIGASTV VS  H  LTSHLH Q MD+S++E  DY+S+LRKRVISWLC
Subjt:  YFSLRSLLPNARRSKAEEEGLRIIGASTVCVSPHHPTLTSHLHFQ-MDKSVEEGDDYKSILRKRVISWLC

A0A1S3BLZ5 transcription factor bHLH1008.8e-2638.21Show/hide
Query:  MAVAPWESYYTLTDENNG--EEQT-----------------LLPKGGEALC---GEIGGSMAEVAALLGLEE--DIYGGFGRENAAF--PPAMNA-NIEP
        M++ PWE  + L DE+NG  EE+T                 L   G EAL      IG S+ E + LLGL+E  +IYG   REN+    PP++NA N EP
Subjt:  MAVAPWESYYTLTDENNG--EEQT-----------------LLPKGGEALC---GEIGGSMAEVAALLGLEE--DIYGGFGRENAAF--PPAMNA-NIEP

Query:  S-----NAKKEEHNARERQRRMELSQLYFSLRSLLPNARRS-----------------------------------------------------------
        S     NAKKEEHNARERQRR+ELS  YFSLRSLLPNARRS                                                           
Subjt:  S-----NAKKEEHNARERQRRMELSQLYFSLRSLLPNARRS-----------------------------------------------------------

Query:  --------------------------------------------KAEEEGLRIIGASTVCVSPH-HPTLTSHLHFQ-MDKSVEEGDDYKSILRKRVISWL
                                                    KAEEEGLRIIGASTV VS H H  LTSHLH Q MD+S++E  D KSI RKRVISWL
Subjt:  --------------------------------------------KAEEEGLRIIGASTVCVSPH-HPTLTSHLHFQ-MDKSVEEGDDYKSILRKRVISWL

Query:  C
        C
Subjt:  C

A0A6J1DXT5 transcription factor bHLH1602.1e-1936.64Show/hide
Query:  ALLGLEEDI------YGGFGREN----AAFPPAMNA-NIEP----------SNAKKEEHNARERQRRMELSQLYFSLRSLLPNARRS-------------
        AL   EEDI      YG   REN      FPP++N  NIE           +NAKKEEHNA+ER+RRM+LSQ YFSLRSLLPN+RRS             
Subjt:  ALLGLEEDI------YGGFGREN----AAFPPAMNA-NIEP----------SNAKKEEHNARERQRRMELSQLYFSLRSLLPNARRS-------------

Query:  ------------------------------------------------------------------------------KAEEEGLRIIGASTVCVSPHHP
                                                                                      KAE EG+ IIGASTV VS  HP
Subjt:  ------------------------------------------------------------------------------KAEEEGLRIIGASTVCVSPHHP

Query:  TLTSHLHFQMDKSVEEGDDYKSILRKRVISWL
        TLT HLH QM+ S++E  DY+S+LRK+VISWL
Subjt:  TLTSHLHFQMDKSVEEGDDYKSILRKRVISWL

A0A6J1HFM3 transcription factor bHLH1601.4e-7664.57Show/hide
Query:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR
        MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR
Subjt:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR

Query:  SLLPNARRS------------------------------------------------------------------------------------------K
        SLLPNARRS                                                                                          K
Subjt:  SLLPNARRS------------------------------------------------------------------------------------------K

Query:  AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISWLC
        AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISWLC
Subjt:  AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISWLC

A0A6J1HVK8 transcription factor bHLH1601.9e-6859.92Show/hide
Query:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR
        MAV PWESYYTLTDENNGEE+T LPKGGEALCGE GGSMAEVAALLGLEEDIYGGFGREN AFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR
Subjt:  MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLR

Query:  SLLPNARRS------------------------------------------------------------------------------------------K
        SLLPNARRS                                                                                          K
Subjt:  SLLPNARRS------------------------------------------------------------------------------------------K

Query:  AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISW
        AEE+GLRIIGAS + VS HHPTLTSHLHFQMD+SVEEGDDYKSILRKRVISW
Subjt:  AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTGGCACCATGGGAGAGTTATTATACATTGACCGATGAAAACAATGGGGAAGAACAAACCCTATTGCCAAAAGGTGGCGAAGCATTGTGTGGTGAGATTGGTGG
GTCTATGGCGGAAGTTGCAGCATTATTGGGTTTGGAGGAAGACATTTATGGAGGTTTTGGGAGAGAAAATGCGGCATTTCCACCAGCCATGAATGCCAATATTGAACCCT
CTAATGCTAAGAAAGAAGAACATAATGCTAGAGAAAGACAAAGGAGGATGGAGCTTTCTCAATTGTACTTTTCCCTTCGATCCTTGCTTCCTAATGCTCGACGATCCAAG
GCTGAAGAAGAAGGCCTTCGGATCATTGGGGCTTCCACAGTTTGTGTTTCTCCTCATCATCCAACCCTCACCTCCCATTTGCATTTTCAGATGGATAAAAGTGTGGAAGA
AGGTGATGATTATAAATCAATATTAAGAAAAAGGGTAATCTCTTGGTTATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTGGCACCATGGGAGAGTTATTATACATTGACCGATGAAAACAATGGGGAAGAACAAACCCTATTGCCAAAAGGTGGCGAAGCATTGTGTGGTGAGATTGGTGG
GTCTATGGCGGAAGTTGCAGCATTATTGGGTTTGGAGGAAGACATTTATGGAGGTTTTGGGAGAGAAAATGCGGCATTTCCACCAGCCATGAATGCCAATATTGAACCCT
CTAATGCTAAGAAAGAAGAACATAATGCTAGAGAAAGACAAAGGAGGATGGAGCTTTCTCAATTGTACTTTTCCCTTCGATCCTTGCTTCCTAATGCTCGACGATCCAAG
GCTGAAGAAGAAGGCCTTCGGATCATTGGGGCTTCCACAGTTTGTGTTTCTCCTCATCATCCAACCCTCACCTCCCATTTGCATTTTCAGATGGATAAAAGTGTGGAAGA
AGGTGATGATTATAAATCAATATTAAGAAAAAGGGTAATCTCTTGGTTATGTTGA
Protein sequenceShow/hide protein sequence
MAVAPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMAEVAALLGLEEDIYGGFGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLRSLLPNARRSK
AEEEGLRIIGASTVCVSPHHPTLTSHLHFQMDKSVEEGDDYKSILRKRVISWLC