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CmoCh19G003470 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G003470
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCmo_Chr19:2891313..2891645
RNA-Seq ExpressionCmoCh19G003470
SyntenyCmoCh19G003470
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW33283.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]7.9e-4177.27Show/hide
Query:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF
        +A+VVGLSTAR+V LALE  FNHHSKA ELRLKDDLQLMK G KPVA YAR FK +C+QL+AIGRPVED DKVHWFLRGLGT+FS+FSTAQ++LTP+P F
Subjt:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF

Query:  VDLVSKVEIF
         DLVSK E F
Subjt:  VDLVSKVEIF

RVW45095.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.3e-4076.36Show/hide
Query:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF
        + +VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQL+AIGRPVED DKVHWFLRGLGT+FS+FSTAQ++LTP+P F
Subjt:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF

Query:  VDLVSKVEIF
         DLVSK E F
Subjt:  VDLVSKVEIF

RVX01763.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]3.9e-4076.36Show/hide
Query:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF
        +A+VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQL+AIGRPVED DKVHWFLRGLG +FS+FSTAQ++LTP+P F
Subjt:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF

Query:  VDLVSKVEIF
         DLVSK E F
Subjt:  VDLVSKVEIF

XP_019081420.1 PREDICTED: uncharacterized protein LOC109124128 isoform X1 [Vitis vinifera]3.9e-4076.36Show/hide
Query:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF
        +A+VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQL+AIGRPVED DKVHWFLRGLG +FS+FSTAQ++LTP+P F
Subjt:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF

Query:  VDLVSKVEIF
         DLVSK E F
Subjt:  VDLVSKVEIF

XP_019081421.1 PREDICTED: uncharacterized protein LOC109124128 isoform X2 [Vitis vinifera]3.9e-4076.36Show/hide
Query:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF
        +A+VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQL+AIGRPVED DKVHWFLRGLG +FS+FSTAQ++LTP+P F
Subjt:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF

Query:  VDLVSKVEIF
         DLVSK E F
Subjt:  VDLVSKVEIF

TrEMBL top hitse value%identityAlignment
A0A438DCU0 Retrovirus-related Pol polyprotein from transposon RE13.8e-4177.27Show/hide
Query:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF
        +A+VVGLSTAR+V LALE  FNHHSKA ELRLKDDLQLMK G KPVA YAR FK +C+QL+AIGRPVED DKVHWFLRGLGT+FS+FSTAQ++LTP+P F
Subjt:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF

Query:  VDLVSKVEIF
         DLVSK E F
Subjt:  VDLVSKVEIF

A0A438EBA0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-4076.36Show/hide
Query:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF
        + +VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQL+AIGRPVED DKVHWFLRGLGT+FS+FSTAQ++LTP+P F
Subjt:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF

Query:  VDLVSKVEIF
         DLVSK E F
Subjt:  VDLVSKVEIF

A0A438FR86 Retrovirus-related Pol polyprotein from transposon RE15.5e-4075.45Show/hide
Query:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF
        +A+VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQ +AIGRPVED DKVHWFLRGL T+FS+FSTAQ++LTP+P F
Subjt:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF

Query:  VDLVSKVEIF
         DLVSK E F
Subjt:  VDLVSKVEIF

A0A438IYJ9 Retrovirus-related Pol polyprotein from transposon RE11.9e-4076.36Show/hide
Query:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF
        +A+VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQL+AIGRPVED DKVHWFLRGLG +FS+FSTAQ++LTP+P F
Subjt:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF

Query:  VDLVSKVEIF
         DLVSK E F
Subjt:  VDLVSKVEIF

A5C5R8 Integrase catalytic domain-containing protein5.5e-4075.45Show/hide
Query:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF
        +A+VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQL+AIGRPVED DKVHWF RGLG +FS+FSTAQ++LTP+P F
Subjt:  MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCF

Query:  VDLVSKVEIF
         DLVSK E F
Subjt:  VDLVSKVEIF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATTGTCGTTGGTCTCTCTACTGCACGTGATGTTCGGCTTGCGTTGGAAACTGCGTTCAACCATCATTCGAAAGCTTGTGAACTGAGACTCAAGGATGACTTGCA
ATTGATGAAACATGGCATCAAACCTGTTGCTGCGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTTATGCCATTGGCAGACCCGTCGAGGATATTGATAAAGTGC
ACTGGTTCCTTCGTGGACTTGGCACAGAATTTTCAGCTTTTTCTACTGCTCAGATAGCTCTCACACCTATCCCTTGTTTTGTAGATTTAGTCTCTAAAGTTGAAATTTTT
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTATTGTCGTTGGTCTCTCTACTGCACGTGATGTTCGGCTTGCGTTGGAAACTGCGTTCAACCATCATTCGAAAGCTTGTGAACTGAGACTCAAGGATGACTTGCA
ATTGATGAAACATGGCATCAAACCTGTTGCTGCGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTTATGCCATTGGCAGACCCGTCGAGGATATTGATAAAGTGC
ACTGGTTCCTTCGTGGACTTGGCACAGAATTTTCAGCTTTTTCTACTGCTCAGATAGCTCTCACACCTATCCCTTGTTTTGTAGATTTAGTCTCTAAAGTTGAAATTTTT
TAG
Protein sequenceShow/hide protein sequence
MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCFVDLVSKVEIF