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CmoCh19G003500 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G003500
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L23, chloroplastic
Genome locationCmo_Chr19:3033093..3041594
RNA-Seq ExpressionCmoCh19G003500
SyntenyCmoCh19G003500
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
GO:0043229 - intracellular organelle (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AXF47193.1 ribosomal protein L23 [Lindera glauca]2.6e-0749.33Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
        VEL FGVKVIA+NSH+LPGK                               G  NGT+YG YNALQTYDHYASTG
Subjt:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
CAG1865805.1 unnamed protein product, partial [Musa acuminata subsp. malaccensis]3.2e-0580Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQC
        VEL FGVKVIAMNSHRLP    R  EWDLLWDIQC
Subjt:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQC
KAG5568790.1 hypothetical protein H5410_064194 [Solanum commersonii]3.2e-0580Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQC
        VEL FGVKVIAMNSHRLP    R  EWDLLWDIQC
Subjt:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQC
QIQ22847.1 ribosomal protein L23 [Cistanche sinensis]1.1e-0853.33Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
        VEL FGVKVIAMNSHRLPGK RR                                GTYYGTYNALQ YDHYASTG
Subjt:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
YP_009020805.1 ribosomal protein L23 [Praxelis clematidea]1.8e-0853.33Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
        VEL FGVKVIAMNSHRL GKARR     ++       +  + +   +     R   TYYGT NALQTYDHYASTG
Subjt:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
TrEMBL top hitse value%identityAlignment
A0A109X1C7 50S ribosomal protein L23, chloroplastic2.0e-0548Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
        VEL FGVKVIAMNSHRLPGK RR                                G   G  NALQTYDHYASTG
Subjt:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
A0A2D1VK55 50S ribosomal protein L23, chloroplastic2.0e-0548Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
        VEL FGVKVIAMNSHRLPGK RR                                G   G  NALQTYDHYASTG
Subjt:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
A0A345BCL7 50S ribosomal protein L23, chloroplastic1.3e-0749.33Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
        VEL FGVKVIA+NSH+LPGK                               G  NGT+YG YNALQTYDHYASTG
Subjt:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
A0A6G9IFP9 Ribosomal protein L235.1e-0953.33Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
        VEL FGVKVIAMNSHRLPGK RR                                GTYYGTYNALQ YDHYASTG
Subjt:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
W8RN00 50S ribosomal protein L23, chloroplastic8.7e-0953.33Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
        VEL FGVKVIAMNSHRL GKARR     ++       +  + +   +     R   TYYGT NALQTYDHYASTG
Subjt:  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTG
SwissProt top hitse value%identityAlignment
Q06FM2 50S ribosomal protein L23, chloroplastic1.6e-0472.73Show/hide
Query:  GYWRKRNTSNVELVFGVKVIAMNSHRLPGKARR
        G  R    S VEL FGVKVIAMNSHRLPGK RR
Subjt:  GYWRKRNTSNVELVFGVKVIAMNSHRLPGKARR
Q2MIE5 50S ribosomal protein L23, chloroplastic2.8e-0491.3Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARR
        VEL FGVKVIAMNSHRLPGK+RR
Subjt:  VELVFGVKVIAMNSHRLPGKARR
Q33BY9 50S ribosomal protein L23, chloroplastic2.8e-0491.3Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARR
        VEL FGVKVIAMNSHRLPGK+RR
Subjt:  VELVFGVKVIAMNSHRLPGKARR
Q3C1N5 50S ribosomal protein L23, chloroplastic2.8e-0491.3Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARR
        VEL FGVKVIAMNSHRLPGK+RR
Subjt:  VELVFGVKVIAMNSHRLPGKARR
Q7FNR4 50S ribosomal protein L23, chloroplastic2.8e-0491.3Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARR
        VEL FGVKVIAMNSHRLPGK+RR
Subjt:  VELVFGVKVIAMNSHRLPGKARR
Arabidopsis top hitse value%identityAlignment
ATCG00840.1 ribosomal protein L23.15.8e-0586.96Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARR
        VEL FGVKVIAMNSHRLPGK +R
Subjt:  VELVFGVKVIAMNSHRLPGKARR
ATCG01300.1 ribosomal protein L235.8e-0586.96Show/hide
Query:  VELVFGVKVIAMNSHRLPGKARR
        VEL FGVKVIAMNSHRLPGK +R
Subjt:  VELVFGVKVIAMNSHRLPGKARR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGGAATCCCTCTTTTTTCCAATCCAGTTCTTCCACCACCGCGAACCCCAACAAAAGTACTCGG
TTATTGGAGAAAAAGAAATACTTCTAATGTCGAACTCGTCTTTGGCGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCAGGAAAAGCTAGAAGGAAGAATGAATGGG
ACCTATTATGGGACATACAATGCACATTACAGACAAAAGTACTCGTCATCAACTCCTGGGAAAGGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCA
TTACAGACGTATGATCATTACGCTTCAACCGGTGAAAGAATAAAGAGGAGCGAAGCAAAGAGACCGATAGGGAGAGGAGCGAAGCAGCTTTACCGGAGAGTGAAAGACTG
A
mRNA sequenceShow/hide mRNA sequence
ATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGGAATCCCTCTTTTTTCCAATCCAGTTCTTCCACCACCGCGAACCCCAACAAAAGTACTCGG
TTATTGGAGAAAAAGAAATACTTCTAATGTCGAACTCGTCTTTGGCGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCAGGAAAAGCTAGAAGGAAGAATGAATGGG
ACCTATTATGGGACATACAATGCACATTACAGACAAAAGTACTCGTCATCAACTCCTGGGAAAGGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCA
TTACAGACGTATGATCATTACGCTTCAACCGGTGAAAGAATAAAGAGGAGCGAAGCAAAGAGACCGATAGGGAGAGGAGCGAAGCAGCTTTACCGGAGAGTGAAAGACTG
A
Protein sequenceShow/hide protein sequence
MDDSRGLAFVDEFSWIGIPLFSNPVLPPPRTPTKVLGYWRKRNTSNVELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNA
LQTYDHYASTGERIKRSEAKRPIGRGAKQLYRRVKD