CuGenDBv2

Gene ID	CmoCh19G003510
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ycf2
Genome location	Cmo_Chr19:3038158..3041489
RNA-Seq Expression	CmoCh19G003510
Synteny	CmoCh19G003510
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4077019.1 unnamed protein product [Lactuca saligna]

2.8e-14

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Query:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLTNQVT
        YVEK RINNYD TYGQFLNILFIRNKIFSLC  KKNML GERYY +N+VT
Subjt:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLTNQVT

KJB60869.1 hypothetical protein B456_009G328900, partial [Gossypium raimondii]

5.8e-12

77.55

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Query:  YVGYVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLT
        ++ YVEK RINNYD TYGQFLNILFI NKIFSLCG KK + LGERYY T
Subjt:  YVGYVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLT

QGW14042.1 Ycf2 [Acer flabellatum]

9.9e-12

76.47

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Query:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLLGERYYLTNQVT
        YVEK RI NYD TYGQFL+ILFIRNKIFSLC G+KK    GERYY TN+VT
Subjt:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLLGERYYLTNQVT

THU43030.1 hypothetical protein C4D60_Mb00t03470 [Musa balbisiana]

6.4e-11

76.47

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Query:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLLGERYYLTNQVT
        YVEKTRINNYDLTYGQFL  LFIRNKIFS C G+KK    GER Y TN+VT
Subjt:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLLGERYYLTNQVT

VVW85193.1 unnamed protein product, partial [Nymphaea colorata]

1.3e-11

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Query:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLTNQVT
        Y EKTRI+NYDLTYGQFL+I FIRNKIFSLC  KK    GERYY TN+VT
Subjt:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLTNQVT

TrEMBL top hits

e value

%identity

Alignment

A0A0D2TVT3 Uncharacterized protein (Fragment)

2.8e-12

77.55

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Query:  YVGYVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLT
        ++ YVEK RINNYD TYGQFLNILFI NKIFSLCG KK + LGERYY T
Subjt:  YVGYVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLT

A0A4S8I5A4 Uncharacterized protein

3.1e-11

76.47

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Query:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLLGERYYLTNQVT
        YVEKTRINNYDLTYGQFL  LFIRNKIFS C G+KK    GER Y TN+VT
Subjt:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLLGERYYLTNQVT

A0A5K1HBK5 Uncharacterized protein (Fragment)

6.3e-12

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Query:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLTNQVT
        Y EKTRI+NYDLTYGQFL+I FIRNKIFSLC  KK    GERYY TN+VT
Subjt:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLTNQVT

A0A650G6R9 Ycf2

4.8e-12

76.47

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Query:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLLGERYYLTNQVT
        YVEK RI NYD TYGQFL+ILFIRNKIFSLC G+KK    GERYY TN+VT
Subjt:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLLGERYYLTNQVT

A0A6S7L0H0 Uncharacterized protein

1.3e-14

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Query:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLTNQVT
        YVEK RINNYD TYGQFLNILFIRNKIFSLC  KKNML GERYY +N+VT
Subjt:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLTNQVT

SwissProt top hits

e value

%identity

Alignment

A0ZZ78 Protein Ycf2

1.3e-11

44.68

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Query:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLLGERYYLTNQVTKEKTSLYLNALIKGRCIEPFNEIVLFQLS----QLVKESIPNI
        YVEK RINNYD TYGQFLNILFIRNKIFSLC G+KK+  LG      + +  + ++++++        E +N    FQ +     LV+ +I +I
Subjt:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLLGERYYLTNQVTKEKTSLYLNALIKGRCIEPFNEIVLFQLS----QLVKESIPNI

A6MMQ1 Protein Ycf2

3.5e-12

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Query:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLL
        YVEKTRINNYDLTYGQFLNILFIRNKIFSLC G+KK++LL
Subjt:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLL

Q0G9F7 Protein Ycf2

1.0e-11

87.5

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Query:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLL
        YVEKTRINNYDLTYGQFLNILFIRNKIFSLC G+KK++ L
Subjt:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLL

Q2QD30 Protein Ycf2

2.1e-12

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Query:  YVGYVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGER
        YV YVEK RINNYD TYGQFLNILFIRNKIFSLCG KK     ER
Subjt:  YVGYVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGER

Q7Y667 Protein Ycf2

1.0e-11

87.5

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Query:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLL
        YVEKTRINNYDLTYGQFLNILFIRNKIFSLC G+KK++ L
Subjt:  YVEKTRINNYDLTYGQFLNILFIRNKIFSLC-GRKKNMLL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

3.5e-07

63.64

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Query:  YVEKTRINNYD--LTYGQFLNILFIRNKIFSLCGRKKNMLLGER
        YVEK R+NN D   TYGQFL ILFI NK FS CG KK     ER
Subjt:  YVEKTRINNYD--LTYGQFLNILFIRNKIFSLCGRKKNMLLGER

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

3.5e-07

63.64

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Query:  YVEKTRINNYD--LTYGQFLNILFIRNKIFSLCGRKKNMLLGER
        YVEK R+NN D   TYGQFL ILFI NK FS CG KK     ER
Subjt:  YVEKTRINNYD--LTYGQFLNILFIRNKIFSLCGRKKNMLLGER

Sequences

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CDS sequence

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ATGCATATAGATAGAAATGGTCCAATGGGAGTGGGAGCAAGAATTTCCAGGAATATTTCATTTCTGAGCGAAAGAGCCATTTTCAACAACTCTATCTACTCTGCTTCTAT
TGTAACAAAAGATTCCCTTTTGATGTATGTTGGTTATGTGGAAAAGACCCGTATCAATAATTATGATTTGACGTATGGACAATTCCTCAATATCTTGTTCATTCGCAACA
AAATCTTTTCTTTGTGCGGCCGTAAAAAAAACATGCTGCTGGGAGAGAGATACTATTTAACCAATCAAGTCACAAAGGAAAAAACGAGTCTTTATCTAAATGCCTTGATC
AAGGGCAGATGTATAGAACCTTTCAACGAGATAGTGCTTTTTCAACTCTCTCAATTGGTAAAGGAATCTATTCCAAACATATATGTCATGGTTCCTTACTTCGACAGGCC
TCTCAAGACACCAATATTTCATAGCAATTTGCAAATATATGACCTTTACCTCTCTTTGCCTGATGCTGCCAAGTCCATTGTGTCACGACGAGAACACATCACGAAAAGAT
TACGGTAA

mRNA sequence

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Protein sequence

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MHIDRNGPMGVGARISRNISFLSERAIFNNSIYSASIVTKDSLLMYVGYVEKTRINNYDLTYGQFLNILFIRNKIFSLCGRKKNMLLGERYYLTNQVTKEKTSLYLNALI
KGRCIEPFNEIVLFQLSQLVKESIPNIYVMVPYFDRPLKTPIFHSNLQIYDLYLSLPDAAKSIVSRREHITKRLR

CmoCh19G003510 (gene) of Cucurbita moschata (Rifu) v1 genome