CuGenDBv2

Gene ID	CmoCh19G003710
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Photosystem I iron-sulfur center
Genome location	Cmo_Chr19:3538311..3543060
RNA-Seq Expression	CmoCh19G003710
Synteny	CmoCh19G003710
Gene Ontology terms	GO:0009060 - aerobic respiration (biological process) GO:0009773 - photosynthetic electron transport in photosystem I (biological process) GO:0015990 - electron transport coupled proton transport (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0003954 - NADH dehydrogenase activity (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0048039 - ubiquinone binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR017896 - 4Fe-4S ferredoxin-type, iron-sulphur binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA3450193.1 NADH-plastoquinone oxidoreductase subunit 4 [Gossypium australe]

1.4e-13

66.18

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACRISSVFPFIYGMKELEAWLQL
        GCTQCVRACPT  LEM PW  CKAKQIASA PR  DC+GCKRCESAC   + F  + G+K+  AWL L
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACRISSVFPFIYGMKELEAWLQL

OAY64349.1 Photosystem I iron-sulfur center, partial [Ananas comosus]

2.1e-14

67.65

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACRISSVFPFIYGMKELEAWLQL
        GCTQCVRACPT  LEM PW  CKAKQIASA PR  DC+GCKRCESAC   + F  + G+K+L AWL L
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACRISSVFPFIYGMKELEAWLQL

OTF84310.1 putative NADH:ubiquinone oxidoreductase [Helianthus annuus]

2.0e-12

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACR---ISSVFPFIY
        GCTQCVRACPT  LEM PW  CKAKQIASA PR  DC+GCKRCESAC    +S + PF Y
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACR---ISSVFPFIY

PHT25300.1 Photosystem I iron-sulfur center [Capsicum baccatum]

3.4e-12

70.18

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACRISSVFPFIY
        GCTQCVRACPT  LEM PW  CKAKQIASA PR  DC+GCKRCESAC I+ +   +Y
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACRISSVFPFIY

QDA80973.1 photosystem I subunit VII [Wurfbainia villosa var. xanthioides]

5.7e-12

82.98

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC
        GCTQCVRACPT  LEMRPW  CKAKQIASA PR  DC+GCKRCESAC
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC

TrEMBL top hits

e value

%identity

Alignment

A0A199UHY5 9 kDa polypeptide (Fragment)

1.0e-14

67.65

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACRISSVFPFIYGMKELEAWLQL
        GCTQCVRACPT  LEM PW  CKAKQIASA PR  DC+GCKRCESAC   + F  + G+K+L AWL L
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACRISSVFPFIYGMKELEAWLQL

A0A1Y3BTL2 9 kDa polypeptide

9.5e-13

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACR---ISSVFPFIY
        GCTQCVRACPT  LEM PW  CKAKQIASA PR  DC+GCKRCESAC    +S + PF Y
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACR---ISSVFPFIY

A0A1Y3BXK7 Multifunctional fusion protein

9.5e-13

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACR---ISSVFPFIY
        GCTQCVRACPT  LEM PW  CKAKQIASA PR  DC+GCKRCESAC    +S + PF Y
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACR---ISSVFPFIY

A0A251T6R1 9 kDa polypeptide

9.5e-13

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACR---ISSVFPFIY
        GCTQCVRACPT  LEM PW  CKAKQIASA PR  DC+GCKRCESAC    +S + PF Y
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACR---ISSVFPFIY

A0A5B6TZ86 9 kDa polypeptide

6.6e-14

66.18

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACRISSVFPFIYGMKELEAWLQL
        GCTQCVRACPT  LEM PW  CKAKQIASA PR  DC+GCKRCESAC   + F  + G+K+  AWL L
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACRISSVFPFIYGMKELEAWLQL

SwissProt top hits

e value

%identity

Alignment

A4GGE7 Photosystem I iron-sulfur center

9.8e-15

82.98

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC
        GCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCESAC
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC

A7M9B0 Photosystem I iron-sulfur center

9.8e-15

82.98

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC
        GCTQCVRACPT  LEM PW RCKAKQIASA PR  DC+GCKRCESAC
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC

A8W3G7 Photosystem I iron-sulfur center

9.8e-15

82.98

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC
        GCTQCVRACPT  LEM PW RCKAKQIASA PR  DC+GCKRCESAC
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC

P10793 Photosystem I iron-sulfur center

9.8e-15

82.98

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC
        GCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCESAC
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC

P42046 Photosystem I iron-sulfur center

9.8e-15

82.98

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC
        GCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCESAC
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC

Arabidopsis top hits

e value

%identity

Alignment

ATCG01060.1 iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding

4.5e-15

80.85

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Query:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC
        GCTQCVRACPT  LEM PW  CKAKQIASA PR  DC+GCKRCESAC
Subjt:  GCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCESAC

Sequences

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CDS sequence

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ATGGAACTCAGTCTTTCACAGGGGTGTACTCAATGTGTCCGAGCTTGCCCCACATTAGAAATGAGACCTTGGGGCAGATGTAAAGCTAAGCAAATAGCTTCGGCTCCACC
AAGAAGATCAGACTGTCTTGGTTGTAAGAGATGTGAATCTGCCTGTCGGATTTCTTCAGTCTTCCCCTTTATTTATGGCATGAAAGAACTCGAAGCATGGCTTCAACTCG
GGTCAAGGCAATTTCAAAACAAAGAATAG

mRNA sequence

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Protein sequence

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MELSLSQGCTQCVRACPTLEMRPWGRCKAKQIASAPPRRSDCLGCKRCESACRISSVFPFIYGMKELEAWLQLGSRQFQNKE

CmoCh19G003710 (gene) of Cucurbita moschata (Rifu) v1 genome