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CmoCh19G003780 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G003780
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptioncytochrome c oxidase subunit 6b-3-like
Genome locationCmo_Chr19:3768757..3769863
RNA-Seq ExpressionCmoCh19G003780
SyntenyCmoCh19G003780
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0045277 - respiratory chain complex IV (cellular component)
InterPro domainsIPR003213 - Cytochrome c oxidase, subunit VIb
IPR036549 - Cytochrome c oxidase, subunit VIb superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022932983.1 cytochrome c oxidase subunit 6b-3-like [Cucurbita moschata]2.5e-76100Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQ
        MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQ
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQ

Query:  KKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        KKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
Subjt:  KKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

XP_022973259.1 cytochrome c oxidase subunit 6b-3-like [Cucurbita maxima]1.5e-6891.55Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP-SSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSL
        MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP SSSSASSAQTNLDGN + RHGGKD+  KVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHS L
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP-SSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSL

Query:  QKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        QKKGEH PECDKFAKYYRSLCP +WIEKWNEQRELGIFPG I
Subjt:  QKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

XP_023542925.1 cytochrome c oxidase subunit 6b-3-like isoform X1 [Cucurbita pepo subsp. pepo]7.2e-7193.01Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSK--VVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSS
        MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGN DRRHGGKD+DSK  VVVEEGVETAPNDMRFPFTNQTRHCYTRYL+YHS 
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSK--VVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSS

Query:  LQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        ++KKGEHAPEC KFAKYYRSLCP EWIEKWNEQRELGIFPGPI
Subjt:  LQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

XP_023542926.1 cytochrome c oxidase subunit 6b-3-like isoform X2 [Cucurbita pepo subsp. pepo]5.5e-7193.66Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSK-VVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSL
        MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGN DRRHGGKD+DSK VVVEEGVETAPNDMRFPFTNQTRHCYTRYL+YHS +
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSK-VVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSL

Query:  QKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        +KKGEHAPEC KFAKYYRSLCP EWIEKWNEQRELGIFPGPI
Subjt:  QKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

XP_031737981.1 cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus]2.8e-5981.02Show/hide
Query:  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGN-SDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGE
        R RD+SKVARGEQAPRP HEYGTVSKPPPPSSSS  SAQTNLDGN  DRR G +D+D+KVV++EGV TAP+D+RFPFTNQTRHCY RYLEYH  +QKKGE
Subjt:  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGN-SDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGE

Query:  HAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        HAPEC KFAKYYRSLCP EW+EKWNEQRELG+FPGP+
Subjt:  HAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

TrEMBL top hitse value%identityAlignment
A0A0A0LEH8 Uncharacterized protein1.4e-5981.02Show/hide
Query:  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGN-SDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGE
        R RD+SKVARGEQAPRP HEYGTVSKPPPPSSSS  SAQTNLDGN  DRR G +D+D+KVV++EGV TAP+D+RFPFTNQTRHCY RYLEYH  +QKKGE
Subjt:  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGN-SDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGE

Query:  HAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        HAPEC KFAKYYRSLCP EW+EKWNEQRELG+FPGP+
Subjt:  HAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

A0A1S3CQ05 putative cytochrome c oxidase subunit 6b-like3.2e-5678.99Show/hide
Query:  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGG--KDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKG
        R RD+SKVARGEQAPRP HEYGTVSKPPPPSS+S  SAQTN D    RR G   KDKD+KVV++EGVETAP+D+RFPFTNQTRHCY RYLEYH  +QKKG
Subjt:  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGG--KDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKG

Query:  EHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        EHAPEC KFA YYRSLCP EW+EKWNEQRELG+FPGPI
Subjt:  EHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

A0A5D3E4S8 Putative cytochrome c oxidase subunit 6b-like3.2e-5678.99Show/hide
Query:  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGG--KDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKG
        R RD+SKVARGEQAPRP HEYGTVSKPPPPSS+S  SAQTN D    RR G   KDKD+KVV++EGVETAP+D+RFPFTNQTRHCY RYLEYH  +QKKG
Subjt:  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGG--KDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKG

Query:  EHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        EHAPEC KFA YYRSLCP EW+EKWNEQRELG+FPGPI
Subjt:  EHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

A0A6J1F3D0 cytochrome c oxidase subunit 6b-3-like1.2e-76100Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQ
        MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQ
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQ

Query:  KKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        KKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
Subjt:  KKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

A0A6J1IE20 cytochrome c oxidase subunit 6b-3-like7.3e-6991.55Show/hide
Query:  MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP-SSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSL
        MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP SSSSASSAQTNLDGN + RHGGKD+  KVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHS L
Subjt:  MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPP-SSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSL

Query:  QKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        QKKGEH PECDKFAKYYRSLCP +WIEKWNEQRELGIFPG I
Subjt:  QKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

SwissProt top hitse value%identityAlignment
O94581 Cytochrome c oxidase subunit 12, mitochondrial6.2e-1753.03Show/hide
Query:  DMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        D RFP TNQT+HC+  Y++Y   ++ KGE    C +F   Y+SLCP+EW+E+W+EQRE G FP PI
Subjt:  DMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

Q945L0 Cytochrome c oxidase subunit 6b-27.3e-2663.89Show/hide
Query:  VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        ++TAP D RFP TNQTRHC+TRY+E+H     KGE + +C++FAKYYR+LCP EW++KWNEQRE G FPGP+
Subjt:  VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

Q9LPJ2 Putative cytochrome c oxidase subunit 6b-like8.7e-1941.8Show/hide
Query:  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEH
        R RDISKVARG+QAPRP H  GTVS  PPP + +   A          + G   +++   VEE         RFP TN+TRHC+ R+++YH  ++K G  
Subjt:  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEH

Query:  APECDKFAKYYRSLCPVEWIEK
        A +C+    Y RS+CP E + K
Subjt:  APECDKFAKYYRSLCPVEWIEK

Q9S7L9 Cytochrome c oxidase subunit 6b-12.7e-2849.25Show/hide
Query:  PVHEYGTV----SKPPPPSSSSASSAQTNLDGNSDRRHGGKDKD-----SKVVVEE-----GVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAP
        PV E  +V    S+  P S+  AS A    + N++      +++     S+ V EE      +ETAP D RFP TNQTRHC+TRY+EYH  +  KG+ AP
Subjt:  PVHEYGTV----SKPPPPSSSSASSAQTNLDGNSDRRHGGKDKD-----SKVVVEE-----GVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAP

Query:  ECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        ECDKFAK+YRSLCP EW+++WNEQRE G FPGP+
Subjt:  ECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

Q9SUD3 Cytochrome c oxidase subunit 6b-31.5e-2666.67Show/hide
Query:  VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        ++TAP D RFP TNQTRHC+TRY+E+H     KGE A EC++FAKYYR+LCP EW++KWNEQRE G FPGP+
Subjt:  VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

Arabidopsis top hitse value%identityAlignment
AT1G22450.1 cytochrome C oxidase 6B1.9e-2949.25Show/hide
Query:  PVHEYGTV----SKPPPPSSSSASSAQTNLDGNSDRRHGGKDKD-----SKVVVEE-----GVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAP
        PV E  +V    S+  P S+  AS A    + N++      +++     S+ V EE      +ETAP D RFP TNQTRHC+TRY+EYH  +  KG+ AP
Subjt:  PVHEYGTV----SKPPPPSSSSASSAQTNLDGNSDRRHGGKDKD-----SKVVVEE-----GVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAP

Query:  ECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        ECDKFAK+YRSLCP EW+++WNEQRE G FPGP+
Subjt:  ECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

AT1G32710.1 Cytochrome c oxidase, subunit Vib family protein6.2e-2041.8Show/hide
Query:  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEH
        R RDISKVARG+QAPRP H  GTVS  PPP + +   A          + G   +++   VEE         RFP TN+TRHC+ R+++YH  ++K G  
Subjt:  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEH

Query:  APECDKFAKYYRSLCPVEWIEK
        A +C+    Y RS+CP E + K
Subjt:  APECDKFAKYYRSLCPVEWIEK

AT4G28060.1 Cytochrome c oxidase, subunit Vib family protein1.0e-2766.67Show/hide
Query:  VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        ++TAP D RFP TNQTRHC+TRY+E+H     KGE A EC++FAKYYR+LCP EW++KWNEQRE G FPGP+
Subjt:  VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI

AT5G57815.1 Cytochrome c oxidase, subunit Vib family protein5.2e-2763.89Show/hide
Query:  VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI
        ++TAP D RFP TNQTRHC+TRY+E+H     KGE + +C++FAKYYR+LCP EW++KWNEQRE G FPGP+
Subjt:  VETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEWIEKWNEQRELGIFPGPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCGCCTCAGCGACCCAGAGACATCAGCAAGGTGGCTCGCGGCGAGCAAGCCCCAAGGCCTGTTCACGAATACGGCACCGTTTCGAAGCCTCCGCCGCCCTCTTC
CTCCTCCGCTTCCTCCGCCCAGACCAACCTCGACGGTAACAGCGATCGCCGCCACGGTGGCAAAGACAAAGACAGTAAGGTGGTGGTGGAAGAGGGAGTAGAGACAGCAC
CAAATGACATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTATACACGCTATTTGGAATACCATAGCTCCCTACAGAAGAAGGGGGAACACGCGCCTGAATGCGAC
AAGTTCGCCAAATATTACCGTTCTCTGTGCCCCGTAGAATGGATTGAGAAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTCCGATATAA
mRNA sequenceShow/hide mRNA sequence
TTATAACTTAAATAAATAAATAAATAATCGAAAAAAAAGGCGAAGCAATAACAACAGTAATAATGTCGGCGCCTCAGCGACCCAGAGACATCAGCAAGGTGGCTCGCGGC
GAGCAAGCCCCAAGGCCTGTTCACGAATACGGCACCGTTTCGAAGCCTCCGCCGCCCTCTTCCTCCTCCGCTTCCTCCGCCCAGACCAACCTCGACGGTAACAGCGATCG
CCGCCACGGTGGCAAAGACAAAGACAGTAAGGTGGTGGTGGAAGAGGGAGTAGAGACAGCACCAAATGACATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTATA
CACGCTATTTGGAATACCATAGCTCCCTACAGAAGAAGGGGGAACACGCGCCTGAATGCGACAAGTTCGCCAAATATTACCGTTCTCTGTGCCCCGTAGAATGGATTGAG
AAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTCCGATATAA
Protein sequenceShow/hide protein sequence
MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECD
KFAKYYRSLCPVEWIEKWNEQRELGIFPGPI