; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh19G003940 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G003940
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSNF2 domain-containing protein CLASSY 4-like
Genome locationCmo_Chr19:4595128..4597156
RNA-Seq ExpressionCmoCh19G003940
SyntenyCmoCh19G003940
Gene Ontology termsGO:0080188 - RNA-directed DNA methylation (biological process)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR044567 - SNF2 domain-containing protein CLSY/DRD1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571778.1 SNF2 domain-containing protein CLASSY 3, partial [Cucurbita argyrosperma subsp. sororia]2.3e-4452.09Show/hide
Query:  VEAGSRRERRENGDFIEGGLRRRKAYGLDI----------------------------------------------------------------------
        VEAGSRRERRE G FIEGGLRRRKAYGLDI                                                                      
Subjt:  VEAGSRRERRENGDFIEGGLRRRKAYGLDI----------------------------------------------------------------------

Query:  -------------------------LVEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDD
                                 LVEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRC+CCSYVKLEIKDI    DTNPYGKSQKR+SGSFEHVKFDD
Subjt:  -------------------------LVEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDD

Query:  LPQDFDCDPHDRSDS
        LPQDFDCDPHDRSDS
Subjt:  LPQDFDCDPHDRSDS

XP_008465909.1 PREDICTED: SNF2 domain-containing protein CLASSY 4-like [Cucumis melo]6.6e-3176.4Show/hide
Query:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS
        VEH+DAFPS LE+VDLCLRGDHQLILDEQIGL+C+CCSYVKLEI++I    DTNP+GKS+KR+S SFEHVK+D L QD DCD HD SDS
Subjt:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS

XP_011652682.2 SNF2 domain-containing protein CLASSY 4 [Cucumis sativus]1.6e-2973.03Show/hide
Query:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS
        VEH+DAFPS LE+VDLCLRGDHQLILDEQIGL+C+CCSYVKLEI++I    DTNP+GKS+K++S  FEHVK+D L QD DCD HD  DS
Subjt:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS

XP_023553658.1 SNF2 domain-containing protein CLASSY 3-like [Cucurbita pepo subsp. pepo]7.8e-4091.01Show/hide
Query:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS
        V+HKD FPSTLERVDLCLRGDHQL+LDEQIGLRCKCCSYVKLEIKDI    DTNPYGKSQKR+SGSFEHVKFDDLPQDFDCDPHDRSDS
Subjt:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS

XP_038888949.1 SNF2 domain-containing protein CLASSY 3-like [Benincasa hispida]2.4e-3380.9Show/hide
Query:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS
        VEH+DAFPS  E+VDLCLRGDHQLILDEQIGLRC+CCS+VKLEI+DI    DTNP+GKSQKRESGSFE VK+D+L QDFDCDPHD SDS
Subjt:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS

TrEMBL top hitse value%identityAlignment
A0A0A0LKD0 Uncharacterized protein7.9e-3073.03Show/hide
Query:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS
        VEH+DAFPS LE+VDLCLRGDHQLILDEQIGL+C+CCSYVKLEI++I    DTNP+GKS+K++S  FEHVK+D L QD DCD HD  DS
Subjt:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS

A0A1S3CRE5 SNF2 domain-containing protein CLASSY 4-like3.2e-3176.4Show/hide
Query:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS
        VEH+DAFPS LE+VDLCLRGDHQLILDEQIGL+C+CCSYVKLEI++I    DTNP+GKS+KR+S SFEHVK+D L QD DCD HD SDS
Subjt:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS

A0A5A7T6P1 SNF2 domain-containing protein CLASSY 4-like3.2e-3176.4Show/hide
Query:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS
        VEH+DAFPS LE+VDLCLRGDHQLILDEQIGL+C+CCSYVKLEI++I    DTNP+GKS+KR+S SFEHVK+D L QD DCD HD SDS
Subjt:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS

A0A6J1E0V0 SNF2 domain-containing protein CLASSY 4-like5.1e-2973.03Show/hide
Query:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS
        VE++D  P+ +E+V+ CL GDH+L+LDEQIGLRC CCSYVKLEIKDI    D NPYGKSQKRE GSFE VK DDL QDFDCDPHD SDS
Subjt:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS

A0A6J1H1W6 SNF2 domain-containing protein CLASSY 4-like3.9e-2977.53Show/hide
Query:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS
        VE++DAF S L++ DLCLRGDHQLILDEQIGLRC  CSYVKLEIKDI     TNP GKSQKRESGSFEHV+FDDL Q+FD DPHD SDS
Subjt:  VEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDI----DTNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRSDS

SwissProt top hitse value%identityAlignment
F4I8S3 SNF2 domain-containing protein CLASSY 32.5e-0431.48Show/hide
Query:  CLRGDHQLILDEQIGLRCKCCSYVKLEIKDIDTNPYGKSQKRESGSFEHVKFDD
        C +G H L +D ++GL+C  C +V+ EI+ +D + +G+   RE   F+  + ++
Subjt:  CLRGDHQLILDEQIGLRCKCCSYVKLEIKDIDTNPYGKSQKRESGSFEHVKFDD

Q9LK10 SNF2 domain-containing protein CLASSY 42.5e-0437.14Show/hide
Query:  LCLRGDHQLILDEQIGLRCKCCSYVKLEIKDID--TNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRS
        LC +G H  +LD++IGL+C  C+YV +EIKDI    + Y +    ++      K D LP   + D  D S
Subjt:  LCLRGDHQLILDEQIGLRCKCCSYVKLEIKDID--TNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRS

Arabidopsis top hitse value%identityAlignment
AT1G05490.1 chromatin remodeling 311.7e-0531.48Show/hide
Query:  CLRGDHQLILDEQIGLRCKCCSYVKLEIKDIDTNPYGKSQKRESGSFEHVKFDD
        C +G H L +D ++GL+C  C +V+ EI+ +D + +G+   RE   F+  + ++
Subjt:  CLRGDHQLILDEQIGLRCKCCSYVKLEIKDIDTNPYGKSQKRESGSFEHVKFDD

AT3G24340.1 chromatin remodeling 401.7e-0537.14Show/hide
Query:  LCLRGDHQLILDEQIGLRCKCCSYVKLEIKDID--TNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRS
        LC +G H  +LD++IGL+C  C+YV +EIKDI    + Y +    ++      K D LP   + D  D S
Subjt:  LCLRGDHQLILDEQIGLRCKCCSYVKLEIKDID--TNPYGKSQKRESGSFEHVKFDDLPQDFDCDPHDRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCCTGTTTCACCCCACACACATTCATTGAAGGTGGAAGCAGGAAGTAGAAGGGAAAGAAGGGAAAATGGAGATTTTATTGAAGGTGGACTAAGAAGGAGGAAAGC
TTATGGATTGGACATATTGGTTGAACACAAAGATGCCTTTCCTTCAACGCTTGAGCGAGTGGATCTGTGTCTTCGCGGTGATCATCAGCTCATACTCGATGAACAAATTG
GACTTAGATGCAAATGTTGTTCATATGTCAAATTGGAAATCAAAGATATTGATACAAATCCATATGGAAAGTCACAAAAGAGGGAATCTGGCTCATTTGAGCATGTTAAA
TTTGATGACCTTCCACAAGATTTTGATTGTGACCCCCATGACAGATCTGATTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCCCTGTTTCACCCCACACACATTCATTGAAGGTGGAAGCAGGAAGTAGAAGGGAAAGAAGGGAAAATGGAGATTTTATTGAAGGTGGACTAAGAAGGAGGAAAGC
TTATGGATTGGACATATTGGTTGAACACAAAGATGCCTTTCCTTCAACGCTTGAGCGAGTGGATCTGTGTCTTCGCGGTGATCATCAGCTCATACTCGATGAACAAATTG
GACTTAGATGCAAATGTTGTTCATATGTCAAATTGGAAATCAAAGATATTGATACAAATCCATATGGAAAGTCACAAAAGAGGGAATCTGGCTCATTTGAGCATGTTAAA
TTTGATGACCTTCCACAAGATTTTGATTGTGACCCCCATGACAGATCTGATTCATGA
Protein sequenceShow/hide protein sequence
MRPVSPHTHSLKVEAGSRRERRENGDFIEGGLRRRKAYGLDILVEHKDAFPSTLERVDLCLRGDHQLILDEQIGLRCKCCSYVKLEIKDIDTNPYGKSQKRESGSFEHVK
FDDLPQDFDCDPHDRSDS