CuGenDBv2

Gene ID	CmoCh19G004080
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	IIIB transcription factor
Genome location	Cmo_Chr19:4790234..4794166
RNA-Seq Expression	CmoCh19G004080
Synteny	CmoCh19G004080
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7011487.1 hypothetical protein SDJN02_26393, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.7e-52

95.24

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Query:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
        MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVP+QAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPI KEAE LMKVQLE
Subjt:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE

Query:  GEERSMKNMVKVMQPQALFEKAEAGR
        GEERSMKNMVKVMQ Q LFEKAEAG+
Subjt:  GEERSMKNMVKVMQPQALFEKAEAGR

XP_022931796.1 uncharacterized protein LOC111438069 isoform X1 [Cucurbita moschata]

4.9e-55

100

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Query:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
        MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
Subjt:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE

Query:  GEERSMKNMVKVMQPQALFEKAE
        GEERSMKNMVKVMQPQALFEKAE
Subjt:  GEERSMKNMVKVMQPQALFEKAE

XP_022931799.1 uncharacterized protein LOC111438069 isoform X2 [Cucurbita moschata]

9.0e-57

100

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Query:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
        MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
Subjt:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE

Query:  GEERSMKNMVKVMQPQALFEKAEAGR
        GEERSMKNMVKVMQPQALFEKAEAGR
Subjt:  GEERSMKNMVKVMQPQALFEKAEAGR

XP_022971855.1 uncharacterized protein LOC111470545 isoform X5 [Cucurbita maxima]

5.1e-52

94.4

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Query:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
        MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERK  IRKVP+QAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPI KEAEALMKVQLE
Subjt:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE

Query:  GEERSMKNMVKVMQPQALFEKAEAG
        GEER+MKNMVKVMQ QALFE AEAG
Subjt:  GEERSMKNMVKVMQPQALFEKAEAG

XP_022971856.1 uncharacterized protein LOC111470545 isoform X6 [Cucurbita maxima]

1.3e-52

94.44

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Query:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
        MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERK  IRKVP+QAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPI KEAEALMKVQLE
Subjt:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE

Query:  GEERSMKNMVKVMQPQALFEKAEAGR
        GEER+MKNMVKVMQ QALFE AEAGR
Subjt:  GEERSMKNMVKVMQPQALFEKAEAGR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EUN0 uncharacterized protein LOC111438069 isoform X1

2.4e-55

100

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Query:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
        MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
Subjt:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE

Query:  GEERSMKNMVKVMQPQALFEKAE
        GEERSMKNMVKVMQPQALFEKAE
Subjt:  GEERSMKNMVKVMQPQALFEKAE

A0A6J1EV87 uncharacterized protein LOC111438069 isoform X2

4.4e-57

100

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Query:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
        MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
Subjt:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE

Query:  GEERSMKNMVKVMQPQALFEKAEAGR
        GEERSMKNMVKVMQPQALFEKAEAGR
Subjt:  GEERSMKNMVKVMQPQALFEKAEAGR

A0A6J1I338 uncharacterized protein LOC111470545 isoform X7

1.2e-51

94.35

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Query:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
        MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERK  IRKVP+QAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPI KEAEALMKVQLE
Subjt:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE

Query:  GEERSMKNMVKVMQPQALFEKAEA
        GEER+MKNMVKVMQ QALFE AEA
Subjt:  GEERSMKNMVKVMQPQALFEKAEA

A0A6J1I4C9 uncharacterized protein LOC111470545 isoform X6

6.5e-53

94.44

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Query:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
        MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERK  IRKVP+QAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPI KEAEALMKVQLE
Subjt:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE

Query:  GEERSMKNMVKVMQPQALFEKAEAGR
        GEER+MKNMVKVMQ QALFE AEAGR
Subjt:  GEERSMKNMVKVMQPQALFEKAEAGR

A0A6J1I6W6 uncharacterized protein LOC111470545 isoform X5

2.5e-52

94.4

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Query:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
        MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERK  IRKVP+QAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPI KEAEALMKVQLE
Subjt:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE

Query:  GEERSMKNMVKVMQPQALFEKAEAG
        GEER+MKNMVKVMQ QALFE AEAG
Subjt:  GEERSMKNMVKVMQPQALFEKAEAG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G17010.1 unknown protein

6.0e-35

58.06

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Query:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE
        M+K+LE+GR+A+FYVRVLSGYE+RRIRS+RL+++KR++QA +RKV I ++P+Q +L EVRRMVEEMQ LNK++E TE+ IE+YFKPI K A  +M++QLE
Subjt:  MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLE

Query:  GEERSMKNMVKVMQPQALFEKAEA
        GE+++M  M+   Q +A+ +  EA
Subjt:  GEERSMKNMVKVMQPQALFEKAEA

Sequences

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CDS sequence

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ATGGACAAGGTTTTAGAGTTTGGACGAAGAGCCCTCTTCTACGTCAGGGTCCTCTCCGGCTATGAACAGCGCCGGATTCGATCCTTTAGGTTGGAGATCCAAAAGCGTCT
CAAACAGGCGGAGGAAAGAAAAGTTGCCATAAGAAAGGTACCCCAACAGGCTATCTTAGGAGAAGTTCGTCGCATGGTTGAGGAGATGCAAACTCTAAATAAGAAGTTAG
AGGAAACAGAGTCTGCCATTGAAGAATACTTCAAGCCAATTCACAAAGAAGCAGAGGCATTAATGAAAGTACAACTGGAAGGAGAAGAGAGAAGTATGAAGAACATGGTT
AAAGTGATGCAGCCGCAGGCTTTGTTTGAAAAAGCTGAGGCAGGTCGATGA

mRNA sequence

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AAAATCATCTTAATTCTTAAACCCCAGCTCGACGAAGCTGTGTATATAAGCTTGGAAGCAAACCGCGAAGAGAAAGGGAGTTTGCAGGGAGGGATTTGGATGGACAAGGT
TTTAGAGTTTGGACGAAGAGCCCTCTTCTACGTCAGGGTCCTCTCCGGCTATGAACAGCGCCGGATTCGATCCTTTAGGTTGGAGATCCAAAAGCGTCTCAAACAGGCGG
AGGAAAGAAAAGTTGCCATAAGAAAGGTACCCCAACAGGCTATCTTAGGAGAAGTTCGTCGCATGGTTGAGGAGATGCAAACTCTAAATAAGAAGTTAGAGGAAACAGAG
TCTGCCATTGAAGAATACTTCAAGCCAATTCACAAAGAAGCAGAGGCATTAATGAAAGTACAACTGGAAGGAGAAGAGAGAAGTATGAAGAACATGGTTAAAGTGATGCA
GCCGCAGGCTTTGTTTGAAAAAGCTGAGGCAGGTCGATGAAACAGTGAAGAATTGTGCATATACGTGAAAACGAGGCTTCTTTAGACTATGTTTATAAATAATTTGTTAA
ATCAATGATGGTCGAG

Protein sequence

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MDKVLEFGRRALFYVRVLSGYEQRRIRSFRLEIQKRLKQAEERKVAIRKVPQQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIHKEAEALMKVQLEGEERSMKNMV
KVMQPQALFEKAEAGR

CmoCh19G004080 (gene) of Cucurbita moschata (Rifu) v1 genome