| GenBank top hits | e value | %identity | Alignment |
|---|
| AQA29583.1 reverse transcriptase [Zea mays] | 2.4e-48 | 41.01 | Show/hide |
Query: PIQLKEGRVFAKIGERDEQHEHR--RWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTIALLMAAADLRLYDIHF-----PTTSELS
PI + E +V + +E+ RW+LDT ATNHMT +R FSELDS + TVKFGDGS++ IEG+G + L + RL +++ L
Subjt: PIQLKEGRVFAKIGERDEQHEHR--RWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTIALLMAAADLRLYDIHF-----PTTSELS
Query: QF------VLVSP------------TAKR-------------------QKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLELVHG
Q V++ AKR +KL++E+MV GLP+I V+++C+ C++ KQ+R PFP YRA E LELVHG
Subjt: QF------VLVSP------------TAKR-------------------QKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLELVHG
Query: DICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYC
D+CGPI TP + FLLLVDD SRFMWLTLL++K++A + + R E EC KK++VLRT+ G EFTS F ++C
Subjt: DICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYC
|
|
| BAF21751.1 Os07g0528100, partial [Oryza sativa Japonica Group] | 6.0e-47 | 38.31 | Show/hide |
Query: PAGEPIQLKEGRVFAKIGERDEQHEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTI-----------------------ALL
P + L E +V +E+ W LDT ATNHMT +RSAF++LD+ + TVKFGDGS+++I GRG + +
Subjt: PAGEPIQLKEGRVFAKIGERDEQHEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTI-----------------------ALL
Query: MAAADLRLYDIHF---------------------PTTSELSQFVLVSP---------TAKR-------------QKLQKEKMVHGLPAIKNVNKLCDGCL
+ D R YD H P+ + + + P TA R ++L + +MV GLP I +V++LCDGCL
Subjt: MAAADLRLYDIHF---------------------PTTSELSQFVLVSP---------TAKR-------------QKLQKEKMVHGLPAIKNVNKLCDGCL
Query: IGKQRRTPFPSQTSYRADEPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSF
GKQRR PFP + +RA + LELVHGD+CGPI ATPG + FLLLVDD SRFMW+ LL K EAA A+K+ K E E +K+R LRT++G EFTS F
Subjt: IGKQRRTPFPSQTSYRADEPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSF
Query: RKYCDEFG
++C + G
Subjt: RKYCDEFG
|
|
| BAG94704.1 unnamed protein product [Oryza sativa Japonica Group] | 6.0e-47 | 38.31 | Show/hide |
Query: PAGEPIQLKEGRVFAKIGERDEQHEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTI-----------------------ALL
P + L E +V +E+ W LDT ATNHMT +RSAF++LD+ + TVKFGDGS+++I GRG + +
Subjt: PAGEPIQLKEGRVFAKIGERDEQHEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTI-----------------------ALL
Query: MAAADLRLYDIHF---------------------PTTSELSQFVLVSP---------TAKR-------------QKLQKEKMVHGLPAIKNVNKLCDGCL
+ D R YD H P+ + + + P TA R ++L + +MV GLP I +V++LCDGCL
Subjt: MAAADLRLYDIHF---------------------PTTSELSQFVLVSP---------TAKR-------------QKLQKEKMVHGLPAIKNVNKLCDGCL
Query: IGKQRRTPFPSQTSYRADEPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSF
GKQRR PFP + +RA + LELVHGD+CGPI ATPG + FLLLVDD SRFMW+ LL K EAA A+K+ K E E +K+R LRT++G EFTS F
Subjt: IGKQRRTPFPSQTSYRADEPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSF
Query: RKYCDEFG
++C + G
Subjt: RKYCDEFG
|
|
| CAE03692.2 OSJNBb0026E15.10 [Oryza sativa Japonica Group] | 1.5e-50 | 31.11 | Show/hide |
Query: LASLSTKRTAQSTWEGIKFRRVGVQRVRESNIEQLQKTI---------------------------------EEEWLARL--------------------
LA+L+ K TAQ WE IK RR+GVQRVRE+N +QL++ E E + +L
Subjt: LASLSTKRTAQSTWEGIKFRRVGVQRVRESNIEQLQKTI---------------------------------EEEWLARL--------------------
Query: --KLKLHENTGESNGPSSRKGSKKPWKSRGRTCRKDGGSKEGVDRWQVDSVLELREERSPEQELMEQSSGNKEKAEKAQSEEDVGERSPEQELMEQSSG-
+L L E TG R K K+ + R D G + + L + + Q+ SSGN ++ + + ++D G Q G
Subjt: --KLKLHENTGESNGPSSRKGSKKPWKSRGRTCRKDGGSKEGVDRWQVDSVLELREERSPEQELMEQSSGNKEKAEKAQSEEDVGERSPEQELMEQSSG-
Query: -------------------NKEKAEK---AQSEEDEPALFMVSAYIPNFDSKSTEVEVIDDDVEPEEELQLGVGKAAPAGEPIQLKEGRVFAKIGERDEQ
+K KA++ AQ E++EPAL + + D V + V P + +P GE + + E +VFA++ + E
Subjt: -------------------NKEKAEK---AQSEEDEPALFMVSAYIPNFDSKSTEVEVIDDDVEPEEELQLGVGKAAPAGEPIQLKEGRVFAKIGERDEQ
Query: HEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEG-------------RGVT-------------------------------------
H+ WILDT ATNHMT +RSAF+ELD+ + TV+FGDGS++ IEG RG+
Subjt: HEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEG-------------RGVT-------------------------------------
Query: ---IALLMAAADLRLYDIHFPTTSELSQFVLVSPTAKR-------------QKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLEL
+ + + +D LY I + + A R +KL +++MV GLP ++ V ++CDGCL+GKQRR FP+Q+ YRADE LEL
Subjt: ---IALLMAAADLRLYDIHFPTTSELSQFVLVSPTAKR-------------QKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLEL
Query: VHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYCDEFG
VHGD+CGPI+ ATP FLLLVDD SR+MWLT++++K EAA A+K + RAE E +K+R LR ++G EFTS F +YC G
Subjt: VHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYCDEFG
|
|
| CAH66352.1 OSIGBa0135C09.3 [Oryza sativa] | 3.4e-50 | 31.5 | Show/hide |
Query: LASLSTKRTAQSTWEGIKFRRVGVQRVRESNIEQLQKTI---------------------------------EEEWLARL--------------------
LA+L+ K TAQ WE IK RR+GVQRVRE+N +QL++ E E + +L
Subjt: LASLSTKRTAQSTWEGIKFRRVGVQRVRESNIEQLQKTI---------------------------------EEEWLARL--------------------
Query: --KLKLHENTGESNGPSSRKGSKKPWKSRGRTCRKDGGSKEGVDRWQVDSVLELREERSPEQELMEQSSGNKEKAEKAQSEEDVGERSPEQELMEQSSG-
+L L E TG R K K+ + R D G + + L + + Q+ S GN ++ + + ++D G Q G
Subjt: --KLKLHENTGESNGPSSRKGSKKPWKSRGRTCRKDGGSKEGVDRWQVDSVLELREERSPEQELMEQSSGNKEKAEKAQSEEDVGERSPEQELMEQSSG-
Query: -------------------NKEKAEK---AQSEEDEPALFMVSAYIPNFDSKSTEVEVIDDDVEPEEELQLGVGKAAPAGEPIQLKEGRVFAKIGERDEQ
+K KA++ AQ E++EPAL + + D V + V P + +P GE + + E +VFA++ + E
Subjt: -------------------NKEKAEK---AQSEEDEPALFMVSAYIPNFDSKSTEVEVIDDDVEPEEELQLGVGKAAPAGEPIQLKEGRVFAKIGERDEQ
Query: HEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTI-----------------------------------ALLMAAADLRLYDI
H+ WILDT ATNHMT +RSAF++LD+ + TV+FGDGS++ IEGRG + +L+ LR++D
Subjt: HEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTI-----------------------------------ALLMAAADLRLYDI
Query: --HFPTTSELSQ-------------FVLVSPTAK----------------RQKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLEL
H S L + +AK +KL +++MV GLP ++ V ++CDGCL+GKQRR FP+Q+ YRADE LEL
Subjt: --HFPTTSELSQ-------------FVLVSPTAK----------------RQKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLEL
Query: VHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYC
VHGD+CGPI+ ATP FLLLVDD SR+MWLTL+++K EAA A+K + AE E +K+R LRT++G EFTS F +YC
Subjt: VHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYC
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1P8YYM3 Reverse transcriptase | 1.2e-48 | 41.01 | Show/hide |
Query: PIQLKEGRVFAKIGERDEQHEHR--RWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTIALLMAAADLRLYDIHF-----PTTSELS
PI + E +V + +E+ RW+LDT ATNHMT +R FSELDS + TVKFGDGS++ IEG+G + L + RL +++ L
Subjt: PIQLKEGRVFAKIGERDEQHEHR--RWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTIALLMAAADLRLYDIHF-----PTTSELS
Query: QF------VLVSP------------TAKR-------------------QKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLELVHG
Q V++ AKR +KL++E+MV GLP+I V+++C+ C++ KQ+R PFP YRA E LELVHG
Subjt: QF------VLVSP------------TAKR-------------------QKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLELVHG
Query: DICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYC
D+CGPI TP + FLLLVDD SRFMWLTLL++K++A + + R E EC KK++VLRT+ G EFTS F ++C
Subjt: DICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYC
|
|
| A0B9X7 OSIGBa0135C09.3 protein | 1.6e-50 | 31.5 | Show/hide |
Query: LASLSTKRTAQSTWEGIKFRRVGVQRVRESNIEQLQKTI---------------------------------EEEWLARL--------------------
LA+L+ K TAQ WE IK RR+GVQRVRE+N +QL++ E E + +L
Subjt: LASLSTKRTAQSTWEGIKFRRVGVQRVRESNIEQLQKTI---------------------------------EEEWLARL--------------------
Query: --KLKLHENTGESNGPSSRKGSKKPWKSRGRTCRKDGGSKEGVDRWQVDSVLELREERSPEQELMEQSSGNKEKAEKAQSEEDVGERSPEQELMEQSSG-
+L L E TG R K K+ + R D G + + L + + Q+ S GN ++ + + ++D G Q G
Subjt: --KLKLHENTGESNGPSSRKGSKKPWKSRGRTCRKDGGSKEGVDRWQVDSVLELREERSPEQELMEQSSGNKEKAEKAQSEEDVGERSPEQELMEQSSG-
Query: -------------------NKEKAEK---AQSEEDEPALFMVSAYIPNFDSKSTEVEVIDDDVEPEEELQLGVGKAAPAGEPIQLKEGRVFAKIGERDEQ
+K KA++ AQ E++EPAL + + D V + V P + +P GE + + E +VFA++ + E
Subjt: -------------------NKEKAEK---AQSEEDEPALFMVSAYIPNFDSKSTEVEVIDDDVEPEEELQLGVGKAAPAGEPIQLKEGRVFAKIGERDEQ
Query: HEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTI-----------------------------------ALLMAAADLRLYDI
H+ WILDT ATNHMT +RSAF++LD+ + TV+FGDGS++ IEGRG + +L+ LR++D
Subjt: HEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTI-----------------------------------ALLMAAADLRLYDI
Query: --HFPTTSELSQ-------------FVLVSPTAK----------------RQKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLEL
H S L + +AK +KL +++MV GLP ++ V ++CDGCL+GKQRR FP+Q+ YRADE LEL
Subjt: --HFPTTSELSQ-------------FVLVSPTAK----------------RQKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLEL
Query: VHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYC
VHGD+CGPI+ ATP FLLLVDD SR+MWLTL+++K EAA A+K + AE E +K+R LRT++G EFTS F +YC
Subjt: VHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYC
|
|
| Q0J5Y3 Os08g0389500 protein | 3.8e-47 | 35.09 | Show/hide |
Query: KFRRVGVQRVRESNIEQLQKTI---EEEWLARLKLKLHENTGESNGPSSRKGSKKPWKSRGRTCRKDGGSKEGVDRWQVDSVLELREERSPEQELMEQSS
+ R V +R R + + Q + +EEW+A+LK + G S KG+ P S G ++ GGS+ DR + S R+ P S
Subjt: KFRRVGVQRVRESNIEQLQKTI---EEEWLARLKLKLHENTGESNGPSSRKGSKKPWKSRGRTCRKDGGSKEGVDRWQVDSVLELREERSPEQELMEQSS
Query: GNKEKAEKAQSEEDVGERSPEQELMEQSSGNKEKAEKAQSEEDEPALFMVSAYIPNFDSKSTEVEVIDDDVEPEEELQLGVGKAAPAGEPIQLKEGRVFA
+K +K + G + E S +++A AQ EE+E + MV+ + +V I P + PA E I L E ++F
Subjt: GNKEKAEKAQSEEDVGERSPEQELMEQSSGNKEKAEKAQSEEDEPALFMVSAYIPNFDSKSTEVEVIDDDVEPEEELQLGVGKAAPAGEPIQLKEGRVFA
Query: KIGERDEQHEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTIALLMAAADLRLYDI-HFP--TTS------------------
++G + E RWILDT ATNHMT RSAFSEL++ IR TVKFGDGS++ IEGRG + L + H P TT+
Subjt: KIGERDEQHEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTIALLMAAADLRLYDI-HFP--TTS------------------
Query: ----------ELSQFVLVSPT-----------------------------------AKRQKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSY
L V+ SP +KL + MV GLP I +V+++CD CL+GKQRR PFPS+ Y
Subjt: ----------ELSQFVLVSPT-----------------------------------AKRQKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSY
Query: RADEPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYCDEFG
RA E LELVHGDICGP+ ATP LFLLLVDD SR+MWL LL +K +A+ A+KR AEAE +K+R LRT++G EFT+ +F +YC E G
Subjt: RADEPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYCDEFG
|
|
| Q7XPB1 OSJNBb0026E15.10 protein | 7.4e-51 | 31.11 | Show/hide |
Query: LASLSTKRTAQSTWEGIKFRRVGVQRVRESNIEQLQKTI---------------------------------EEEWLARL--------------------
LA+L+ K TAQ WE IK RR+GVQRVRE+N +QL++ E E + +L
Subjt: LASLSTKRTAQSTWEGIKFRRVGVQRVRESNIEQLQKTI---------------------------------EEEWLARL--------------------
Query: --KLKLHENTGESNGPSSRKGSKKPWKSRGRTCRKDGGSKEGVDRWQVDSVLELREERSPEQELMEQSSGNKEKAEKAQSEEDVGERSPEQELMEQSSG-
+L L E TG R K K+ + R D G + + L + + Q+ SSGN ++ + + ++D G Q G
Subjt: --KLKLHENTGESNGPSSRKGSKKPWKSRGRTCRKDGGSKEGVDRWQVDSVLELREERSPEQELMEQSSGNKEKAEKAQSEEDVGERSPEQELMEQSSG-
Query: -------------------NKEKAEK---AQSEEDEPALFMVSAYIPNFDSKSTEVEVIDDDVEPEEELQLGVGKAAPAGEPIQLKEGRVFAKIGERDEQ
+K KA++ AQ E++EPAL + + D V + V P + +P GE + + E +VFA++ + E
Subjt: -------------------NKEKAEK---AQSEEDEPALFMVSAYIPNFDSKSTEVEVIDDDVEPEEELQLGVGKAAPAGEPIQLKEGRVFAKIGERDEQ
Query: HEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEG-------------RGVT-------------------------------------
H+ WILDT ATNHMT +RSAF+ELD+ + TV+FGDGS++ IEG RG+
Subjt: HEHRRWILDTRATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEG-------------RGVT-------------------------------------
Query: ---IALLMAAADLRLYDIHFPTTSELSQFVLVSPTAKR-------------QKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLEL
+ + + +D LY I + + A R +KL +++MV GLP ++ V ++CDGCL+GKQRR FP+Q+ YRADE LEL
Subjt: ---IALLMAAADLRLYDIHFPTTSELSQFVLVSPTAKR-------------QKLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLEL
Query: VHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYCDEFG
VHGD+CGPI+ ATP FLLLVDD SR+MWLT++++K EAA A+K + RAE E +K+R LR ++G EFTS F +YC G
Subjt: VHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYCDEFG
|
|
| Q7XUD9 OSJNBa0088A01.6 protein | 5.5e-46 | 32.4 | Show/hide |
Query: LASLSTKRTAQSTWEGIKFRRVGVQRVRESNIEQLQKTIE----------EEWLARLK--------LKLHENTG--------------------------
LASL+ K +A+ W+ IK RVGV RVR+S + LQK + EE+ RL L +H G
Subjt: LASLSTKRTAQSTWEGIKFRRVGVQRVRESNIEQLQKTIE----------EEWLARLK--------LKLHENTG--------------------------
Query: -------ESNGPSSRKGSKKPWKSRGRTCRKDGGSKEGVDRWQVDSVLELREERSPEQELMEQSSGNKEKAEKAQSEEDVGERSPEQELMEQSSGNKEKA
E G K P KS + ++ RW+ E ++ + G K+KAE A + D R + E N++K
Subjt: -------ESNGPSSRKGSKKPWKSRGRTCRKDGGSKEGVDRWQVDSVLELREERSPEQELMEQSSGNKEKAEKAQSEEDVGERSPEQELMEQSSGNKEKA
Query: E---------KAQSEEDEPALFMVSAYIPNFDSKSTEVEVIDDDVEPEEELQLGVGKAAPAGEP-------IQLKEGRVFAKIGERDEQHEHRRWILDTR
K + PA AY D E ++ V + A PA P I+L E +VFA + ++Q + W LDT
Subjt: E---------KAQSEEDEPALFMVSAYIPNFDSKSTEVEVIDDDVEPEEELQLGVGKAAPAGEP-------IQLKEGRVFAKIGERDEQHEHRRWILDTR
Query: ATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTI---------------------ALLMA-------AADLRLY----DIHFPTTSEL------
ATNHMT R F+ELD +R +V+FGDGS++ IEGRG I A L++ D+R+Y I P L
Subjt: ATNHMTRARSAFSELDSEIRRTVKFGDGSIIEIEGRGVTI---------------------ALLMA-------AADLRLY----DIHFPTTSEL------
Query: -SQFVLVSPT--------AKRQ-------------------KLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLELVHGDICGPIKS
++ L+ T AK Q +L MV G+P I +V +LCD C+I KQRRTPFP ++ +RA++ LELVHGD+CGPI
Subjt: -SQFVLVSPT--------AKRQ-------------------KLQKEKMVHGLPAIKNVNKLCDGCLIGKQRRTPFPSQTSYRADEPLELVHGDICGPIKS
Query: ATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYCDEFG
ATPG K+ FLLL DD SR+MW+TLL KSEAA+A+KR + RAEAE ++K+R+LRT+ G EFTS F YC E G
Subjt: ATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYCDEFG
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 9.4e-11 | 28.57 | Show/hide |
Query: KRQKLQKEKMVHGLPAIKNVN---KLCDGCLIGKQRRTPFPS-QTSYRADEPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEA
K +++++ M + N+ ++C+ CL GKQ R PF + PL +VH D+CGPI T K+ F++ VD + + L++ KS+
Subjt: KRQKLQKEKMVHGLPAIKNVN---KLCDGCLIGKQRRTPFPS-QTSYRADEPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEA
Query: VKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYCDEFG
+ ++EA K+ L + GRE+ S R++C + G
Subjt: VKRIKVRAEAECEKKMRVLRTEQGREFTSTSFRKYCDEFG
|
|
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.3e-15 | 35.65 | Show/hide |
Query: KLCDGCLIGKQRRTPFPSQTSYRADEPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGR
K CD CL GKQ R F + +S R L+LV+ D+CGP++ + G F+ +DD SR +W+ +L+ K + + ++ E E +K++ LR++ G
Subjt: KLCDGCLIGKQRRTPFPSQTSYRADEPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKRIKVRAEAECEKKMRVLRTEQGR
Query: EFTSTSFRKYCDEFG
E+TS F +YC G
Subjt: EFTSTSFRKYCDEFG
|
|
| P25384 Transposon Ty2-C Gag-Pol polyprotein | 3.5e-05 | 27.43 | Show/hide |
Query: CDGCLIGK--QRRTPFPSQTSYRAD-EPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAA--EAVKRIKVRAEAECEKKMRVLRTE
C CLIGK + R S+ Y+ EP + +H DI GP+ S F+ D+K+RF W+ L + E + I + + ++ V++ +
Subjt: CDGCLIGK--QRRTPFPSQTSYRAD-EPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAA--EAVKRIKVRAEAECEKKMRVLRTE
Query: QGREFTSTSFRKY
+G E+T+ + K+
Subjt: QGREFTSTSFRKY
|
|
| Q12472 Transposon Ty2-DR1 Gag-Pol polyprotein | 3.5e-05 | 27.43 | Show/hide |
Query: CDGCLIGK--QRRTPFPSQTSYRAD-EPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAA--EAVKRIKVRAEAECEKKMRVLRTE
C CLIGK + R S+ Y+ EP + +H DI GP+ S F+ D+K+RF W+ L + E + I + + ++ V++ +
Subjt: CDGCLIGK--QRRTPFPSQTSYRAD-EPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAA--EAVKRIKVRAEAECEKKMRVLRTE
Query: QGREFTSTSFRKY
+G E+T+ + K+
Subjt: QGREFTSTSFRKY
|
|
| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 3.5e-05 | 27.43 | Show/hide |
Query: CDGCLIGK--QRRTPFPSQTSYRAD-EPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAA--EAVKRIKVRAEAECEKKMRVLRTE
C CLIGK + R S+ Y+ EP + +H DI GP+ S F+ D+K+RF W+ L + E + I + + ++ V++ +
Subjt: CDGCLIGK--QRRTPFPSQTSYRAD-EPLELVHGDICGPIKSATPGCKSLFLLLVDDKSRFMWLTLLQAKSEAA--EAVKRIKVRAEAECEKKMRVLRTE
Query: QGREFTSTSFRKY
+G E+T+ + K+
Subjt: QGREFTSTSFRKY
|
|
