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CmoCh19G004190 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G004190
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionlow-temperature-induced 65 kDa protein-like
Genome locationCmo_Chr19:5022681..5023841
RNA-Seq ExpressionCmoCh19G004190
SyntenyCmoCh19G004190
Gene Ontology termsGO:0009737 - response to abscisic acid (biological process)
InterPro domainsIPR037491 - Low-temperature-induced 78kDa/65kDa


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571801.1 hypothetical protein SDJN03_28529, partial [Cucurbita argyrosperma subsp. sororia]4.5e-2697.06Show/hide
Query:  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEEI
        MDSQI PQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE+
Subjt:  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEEI

XP_022952678.1 low-temperature-induced 78 kDa protein-like [Cucurbita moschata]9.1e-2798.53Show/hide
Query:  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEEI
        MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE+
Subjt:  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEEI

XP_022971843.1 low-temperature-induced 65 kDa protein-like [Cucurbita maxima]2.1e-2393.75Show/hide
Query:  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEED
        MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHG HDHPHDYDDD+EE++
Subjt:  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEED

XP_023554181.1 low-temperature-induced 65 kDa protein-like [Cucurbita pepo subsp. pepo]5.5e-2495.38Show/hide
Query:  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDD
        MDSQIAPQQQHHQGVEGEEDGQHHEKQSVL KVKAKAKKIKDNITKHGAHDHPHDYDDDDEE+D+
Subjt:  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDD

XP_038888501.1 low-temperature-induced 65 kDa protein isoform X1 [Benincasa hispida]1.6e-1065.38Show/hide
Query:  MDSQIAPQQQ------HHQGVEG--EEDGQHHEKQSVLKKVKAKAKKIKDNITKHG-AHDHP-HDYDDDDEEEDDEEI
        MDSQIAP          HQ VEG  EEDGQ HEK+SVLKKVKAKAKKIKD ITKHG  HDH  HDY+D+D+E++D+E+
Subjt:  MDSQIAPQQQ------HHQGVEG--EEDGQHHEKQSVLKKVKAKAKKIKDNITKHG-AHDHP-HDYDDDDEEEDDEEI

TrEMBL top hitse value%identityAlignment
A0A1S3CPX7 low-temperature-induced 65 kDa protein2.7e-0859.74Show/hide
Query:  MDSQIAPQQQH------HQGVEG----EEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE
        MDSQI P   H      HQ  EG    EE  +HHEK+SVLKKVKAKAKKIKD ITKH    H HD+ D+++EEDDEE
Subjt:  MDSQIAPQQQH------HQGVEG----EEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE

A0A6J1DNM6 low-temperature-induced 65 kDa protein-like1.9e-0659.09Show/hide
Query:  QIAPQQ--QHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE
        QIAP      HQGV+  ++ + HEK+SVLKKVKAKAKKIKD ITKHG   HPH Y+D++E++D++E
Subjt:  QIAPQQ--QHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE

A0A6J1GLA2 low-temperature-induced 78 kDa protein-like4.4e-2798.53Show/hide
Query:  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEEI
        MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE+
Subjt:  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEEI

A0A6J1I850 low-temperature-induced 65 kDa protein-like1.0e-2393.75Show/hide
Query:  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEED
        MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHG HDHPHDYDDD+EE++
Subjt:  MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEED

A0A6J1K662 low-temperature-induced 65 kDa protein4.6e-0861.11Show/hide
Query:  QIAPQQQH-----------HQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHG-AHDHPHDYDDDDEEE
        Q AP + H           ++  EGEEDGQHHEK+SVLKKVKAKAKKIKD ITKHG AHDH H+ +D +EEE
Subjt:  QIAPQQQH-----------HQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHG-AHDHPHDYDDDDEEE

SwissProt top hitse value%identityAlignment
Q04980 Low-temperature-induced 65 kDa protein1.7e-0445.95Show/hide
Query:  MDSQIAPQQQHHQG-----VEGEEDGQHHEK--QSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE
        M+SQ+     H Q      +   E+ +HHEK    VLKKVK KAKKIK+++TKHG + H HD +DDD+E D+++
Subjt:  MDSQIAPQQQHHQG-----VEGEEDGQHHEK--QSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE

Arabidopsis top hitse value%identityAlignment
AT4G25580.1 CAP160 protein5.2e-0450.6Show/hide
Query:  MDSQIAPQQQ--HHQGVE------GEEDGQHHEK--QSVLKKVKAKAKKIKDNITKHGAHDHPHDY------DDDDEEEDDEE
        MDSQ   Q+   HHQ  E       EE+G HHEK    VLKKVK KAKKIK+ +TKHG H H HD       D D ++EDDE+
Subjt:  MDSQIAPQQQ--HHQGVE------GEEDGQHHEK--QSVLKKVKAKAKKIKDNITKHGAHDHPHDY------DDDDEEEDDEE

AT5G52300.1 CAP160 protein1.2e-0545.95Show/hide
Query:  MDSQIAPQQQHHQG-----VEGEEDGQHHEK--QSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE
        M+SQ+     H Q      +   E+ +HHEK    VLKKVK KAKKIK+++TKHG + H HD +DDD+E D+++
Subjt:  MDSQIAPQQQHHQG-----VEGEEDGQHHEK--QSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE

AT5G52300.2 CAP160 protein3.6e-0546.58Show/hide
Query:  MDSQIAPQQQHHQGVE----GEEDGQHHEK--QSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE
        M+SQ+     H Q  E       + +HHEK    VLKKVK KAKKIK+++TKHG + H HD +DDD+E D+++
Subjt:  MDSQIAPQQQHHQGVE----GEEDGQHHEK--QSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCCCAAATCGCCCCTCAGCAACAGCATCACCAAGGTGTGGAAGGGGAAGAAGATGGGCAGCATCATGAGAAGCAGTCAGTGTTGAAGAAAGTGAAGGCTAAGGC
TAAGAAGATTAAGGACAATATTACAAAGCATGGCGCCCATGACCATCCTCATGACTACGATGATGATGATGAAGAAGAAGATGATGAGGAGATTAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACTCCCAAATCGCCCCTCAGCAACAGCATCACCAAGGTGTGGAAGGGGAAGAAGATGGGCAGCATCATGAGAAGCAGTCAGTGTTGAAGAAAGTGAAGGCTAAGGC
TAAGAAGATTAAGGACAATATTACAAAGCATGGCGCCCATGACCATCCTCATGACTACGATGATGATGATGAAGAAGAAGATGATGAGGAGATTAGCTAA
Protein sequenceShow/hide protein sequence
MDSQIAPQQQHHQGVEGEEDGQHHEKQSVLKKVKAKAKKIKDNITKHGAHDHPHDYDDDDEEEDDEEIS