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CmoCh19G004780 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G004780
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLate embryoproteinsis abundant group 1 domain-containing family protein
Genome locationCmo_Chr19:5696962..5699309
RNA-Seq ExpressionCmoCh19G004780
SyntenyCmoCh19G004780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571846.1 Ferredoxin C 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.6e-7195.17Show/hide
Query:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT
        MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEI ASTT
Subjt:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT

Query:  DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQVMRMICV
        DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ   ++ V
Subjt:  DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQVMRMICV

XP_022155947.1 uncharacterized protein LOC111022940 [Momordica charantia]5.8e-5978Show/hide
Query:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQ------------ARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFL
        MRFFR+IAGILG +KDD+HD+K+EDEDVDSDNQ             RRGFSVPVQVAVNRPQPGP+L+PSSS DGGVQGL WYA RLRVDEDGDVAEQFL
Subjt:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQ------------ARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFL

Query:  DEVLPEIPASTTDHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
        DEVLPE+P STTDH K+ PRFQ+N+RNRPAKVE QVILQEGKLQQCI+HQ
Subjt:  DEVLPEIPASTTDHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ

XP_022952431.1 uncharacterized protein LOC111455119 [Cucurbita moschata]5.9e-72100Show/hide
Query:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT
        MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT
Subjt:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT

Query:  DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
        DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
Subjt:  DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ

XP_022972010.1 uncharacterized protein LOC111470656 [Cucurbita maxima]8.6e-7197.83Show/hide
Query:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT
        MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPV+VAVNRPQPGPVL+PSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT
Subjt:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT

Query:  DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
        DHHKA PRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
Subjt:  DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ

XP_023553640.1 uncharacterized protein LOC111811132 [Cucurbita pepo subsp. pepo]1.1e-7097.83Show/hide
Query:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT
        MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVP QVAVNRPQPGPVLLPS+SRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT
Subjt:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT

Query:  DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
        DHHKA PRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
Subjt:  DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ

TrEMBL top hitse value%identityAlignment
A0A5D3E6C0 Uncharacterized protein6.9e-5875.32Show/hide
Query:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQA------------RRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFL
        MRFFRKIAGILG SKDD+HDVK+ED+DVDSD  A            RRGFSVPVQVAVNR  PGP+LLPSSS DGGVQGLTWYAK LR+DEDGDVAEQFL
Subjt:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQA------------RRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFL

Query:  DEVLPEIPASTTDHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQVMRM
        +EV+PE+  STTDH K  PRFQINNRNRPAKVE QVIL+EGKLQQCIEHQ +++
Subjt:  DEVLPEIPASTTDHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQVMRM

A0A6J1DQR1 uncharacterized protein LOC1110229402.8e-5978Show/hide
Query:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQ------------ARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFL
        MRFFR+IAGILG +KDD+HD+K+EDEDVDSDNQ             RRGFSVPVQVAVNRPQPGP+L+PSSS DGGVQGL WYA RLRVDEDGDVAEQFL
Subjt:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQ------------ARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFL

Query:  DEVLPEIPASTTDHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
        DEVLPE+P STTDH K+ PRFQ+N+RNRPAKVE QVILQEGKLQQCI+HQ
Subjt:  DEVLPEIPASTTDHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ

A0A6J1ES60 uncharacterized protein LOC1114373012.4e-5880.67Show/hide
Query:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQA-----------RRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLD
        MRF RKIAG LG SKDDAHDVKHEDE+V+S NQA           RRGFSVPVQVAVN PQPGP+L+PSSS DGGVQGLTWYAKRLRVDEDGDVAEQFLD
Subjt:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQA-----------RRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLD

Query:  EVLPEIPAS-TTDHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
        EVLPE P S TTDHHK  PRFQINNRNR AKV+ QVILQEGKLQQCIEHQ
Subjt:  EVLPEIPAS-TTDHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ

A0A6J1GK76 uncharacterized protein LOC1114551192.9e-72100Show/hide
Query:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT
        MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT
Subjt:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT

Query:  DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
        DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
Subjt:  DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ

A0A6J1I7B9 uncharacterized protein LOC1114706564.1e-7197.83Show/hide
Query:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT
        MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPV+VAVNRPQPGPVL+PSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT
Subjt:  MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTT

Query:  DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
        DHHKA PRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
Subjt:  DHHKAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G17960.1 unknown protein2.2e-3249.02Show/hide
Query:  MRFFRKIAGILGLSKDDAHDVKHEDEDV----DSDNQ--------ARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFL
        M FF+K+AG+ G  ++    +K+E++D+    D  NQ         R+GF VPVQVAV R Q GP+L P ++ DGG+QGL WY KRLRVDEDGDVA++FL
Subjt:  MRFFRKIAGILGLSKDDAHDVKHEDEDV----DSDNQ--------ARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFL

Query:  DEVLPEIPASTTDHH---KAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ
        +E   E   +  D H   K +PRFQI  + +P KV   V+  +GKLQQCIEHQ
Subjt:  DEVLPEIPASTTDHH---KAIPRFQINNRNRPAKVEKQVILQEGKLQQCIEHQ

AT5G46620.1 unknown protein1.9e-2038.61Show/hide
Query:  MRFFRKIAGILGLSKDDAHD----VKHEDEDVDSDNQA----------------------RRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKR
        M F +K+ GILG   +D       V+ ED D   +N                        R+GF VPVQVAV R  PGP+L P ++ DGGVQGL WY+ R
Subjt:  MRFFRKIAGILGLSKDDAHD----VKHEDEDVDSDNQA----------------------RRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKR

Query:  LRVDEDGDVAEQFLDEVLPEIPASTTDHHKAIPRFQINNRNRPAKVEKQVILQEGKLQ
        L++DEDGDVA++FL++           + K +PR     + + AKV   VI  +GKLQ
Subjt:  LRVDEDGDVAEQFLDEVLPEIPASTTDHHKAIPRFQINNRNRPAKVEKQVILQEGKLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGTTCTTCAGGAAGATTGCAGGAATTCTAGGGCTTTCCAAGGACGATGCTCACGACGTCAAGCACGAAGATGAAGACGTTGATTCCGATAATCAGGCTCGGCGGGG
CTTTAGCGTCCCAGTTCAGGTCGCTGTTAATCGTCCGCAACCCGGTCCTGTTCTTCTTCCCTCTAGTTCACGTGATGGTGGAGTTCAGGGTTTAACATGGTATGCTAAGC
GCCTTCGAGTTGATGAAGATGGAGATGTAGCCGAACAGTTCCTGGATGAGGTCTTACCTGAGATACCAGCCAGTACTACAGACCATCACAAGGCGATTCCTCGATTTCAG
ATAAATAATAGAAACAGACCAGCTAAAGTAGAGAAGCAGGTTATATTGCAGGAAGGTAAACTTCAACAGTGTATTGAACATCAAGTTATGAGGATGATCTGTGTCGGTTT
TGATGACGAGAAAGCTTCGCATACAGTACCGAAGCTTGCATCAACTTTATTAAGGAGTCTACATTAG
mRNA sequenceShow/hide mRNA sequence
ACAGCGAGTTTAAAAGTATCCGTCGGAGAAAAAGCATACAAAATCTCCAACGATCCCATAATTCAGAAACCCGGCAATCGGATTCCGCCCTTTTTCTTTCTCAACATCTC
CTTCTCTCTCTGATTCAATCAATTCGATCCTTGATCCTTCACCCTTCATCGTTGCAAGGTGGAGATGCGGTTCTTCAGGAAGATTGCAGGAATTCTAGGGCTTTCCAAGG
ACGATGCTCACGACGTCAAGCACGAAGATGAAGACGTTGATTCCGATAATCAGGCTCGGCGGGGCTTTAGCGTCCCAGTTCAGGTCGCTGTTAATCGTCCGCAACCCGGT
CCTGTTCTTCTTCCCTCTAGTTCACGTGATGGTGGAGTTCAGGGTTTAACATGGTATGCTAAGCGCCTTCGAGTTGATGAAGATGGAGATGTAGCCGAACAGTTCCTGGA
TGAGGTCTTACCTGAGATACCAGCCAGTACTACAGACCATCACAAGGCGATTCCTCGATTTCAGATAAATAATAGAAACAGACCAGCTAAAGTAGAGAAGCAGGTTATAT
TGCAGGAAGGTAAACTTCAACAGTGTATTGAACATCAAGTTATGAGGATGATCTGTGTCGGTTTTGATGACGAGAAAGCTTCGCATACAGTACCGAAGCTTGCATCAACT
TTATTAAGGAGTCTACATTAG
Protein sequenceShow/hide protein sequence
MRFFRKIAGILGLSKDDAHDVKHEDEDVDSDNQARRGFSVPVQVAVNRPQPGPVLLPSSSRDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEIPASTTDHHKAIPRFQ
INNRNRPAKVEKQVILQEGKLQQCIEHQVMRMICVGFDDEKASHTVPKLASTLLRSLH