; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh19G005790 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G005790
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSWIB domain-containing protein
Genome locationCmo_Chr19:6568435..6570105
RNA-Seq ExpressionCmoCh19G005790
SyntenyCmoCh19G005790
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571933.1 hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sororia]7.7e-6096.85Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIICDEKLKKIFGGKDEMNFV
        KPSDKKII+CDEKLKKIFGGKDE+ F+
Subjt:  KPSDKKIIICDEKLKKIFGGKDEMNFV

XP_022952608.1 uncharacterized protein LOC111455244 [Cucurbita moschata]3.5e-6097.64Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIICDEKLKKIFGGKDEMNFV
        KPSDKKIIICDEKLKKIFGGKDE+ F+
Subjt:  KPSDKKIIICDEKLKKIFGGKDEMNFV

XP_022972543.1 uncharacterized protein LOC111471082 [Cucurbita maxima]8.0e-5792.91Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTFVSGE SLL+ARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQ TASSRQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIICDEKLKKIFGGKDEMNFV
        KPSDKKII+CDEKLKKIFGGKDE+ F+
Subjt:  KPSDKKIIICDEKLKKIFGGKDEMNFV

XP_023553864.1 uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]1.7e-5996.06Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIWTHIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIICDEKLKKIFGGKDEMNFV
        KP+DKKIIICDEKLKKIFGGKDE+ F+
Subjt:  KPSDKKIIICDEKLKKIFGGKDEMNFV

XP_038888173.1 uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida]1.8e-5385.04Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAF+STF+SGEPSLLV +ASA  +SVK PYQLPLPNLRF+RT+TFASASNQ TAS RQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIICDEKLKKIFGGKDEMNFV
        KPSDKK+IICDEKLK IFGGKDE+ F+
Subjt:  KPSDKKIIICDEKLKKIFGGKDEMNFV

TrEMBL top hitse value%identityAlignment
A0A6J1D4Q4 uncharacterized protein LOC1110172915.2e-4678.74Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTF SGEP+LLVARASA  SS+KH  QLP  NLRF R +TFA+AS+Q TAS R+PRGIMKPR ISPEMQALVG PEISRT+ALKVIWTHIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIICDEKLKKIFGGKDEMNFV
        +P +KKII+CDEKLKKIFGGKDE+ F+
Subjt:  KPSDKKIIICDEKLKKIFGGKDEMNFV

A0A6J1EIX1 uncharacterized protein LOC1114346996.0e-5081.1Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTF+SGE SLL  RASA  SSVKHPYQ P  NL F+RT+TFAS SNQ TAS RQPRGIMKP+RISPEMQALVG PEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIICDEKLKKIFGGKDEMNFV
        KPSDKK+IICDEKLK IFGGKDE+ F+
Subjt:  KPSDKKIIICDEKLKKIFGGKDEMNFV

A0A6J1GL33 uncharacterized protein LOC1114552441.7e-6097.64Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIICDEKLKKIFGGKDEMNFV
        KPSDKKIIICDEKLKKIFGGKDE+ F+
Subjt:  KPSDKKIIICDEKLKKIFGGKDEMNFV

A0A6J1IAA1 uncharacterized protein LOC1114710823.9e-5792.91Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTFVSGE SLL+ARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQ TASSRQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIICDEKLKKIFGGKDEMNFV
        KPSDKKII+CDEKLKKIFGGKDE+ F+
Subjt:  KPSDKKIIICDEKLKKIFGGKDEMNFV

A0A6J1JNZ3 uncharacterized protein LOC1114861976.0e-5081.1Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ
        MAFVSTF+SGE SLL  RASA  SSVKHPYQ P  NL F+RT+TFAS SNQ TAS RQPRGIMKP+RISPEMQALVG PEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ

Query:  KPSDKKIIICDEKLKKIFGGKDEMNFV
        KPSDKK+IICDEKLK IFGGKDE+ F+
Subjt:  KPSDKKIIICDEKLKKIFGGKDEMNFV

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp272.9e-0943.64Show/hide
Query:  KPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF
        KP ++SP++   +G  ++SR + +K +W +IK H+LQ P+DK+ I+CD+KLK +F
Subjt:  KPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF

Q05024 Protein TRI17.6e-1047.37Show/hide
Query:  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEM
        +S  +Q  +G+ E+ RT+ +K+IW +IKEH+LQ P D++ I+CDEK++ IFG K  M
Subjt:  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEM

Q08747 Upstream activation factor subunit UAF301.4e-0845.61Show/hide
Query:  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEM
        +S  + +L+G  E++RTE ++ +W +IK HNLQ P++KK I+CDEKL+ I G    M
Subjt:  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEM

Arabidopsis top hitse value%identityAlignment
AT1G49520.1 SWIB complex BAF60b domain-containing protein1.5e-1353.45Show/hide
Query:  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF
        G  K   +SPE+QA  G P+++RTE +K++W +IKE+NLQ PSDK+ IICDE L+ +F
Subjt:  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF

AT2G14880.1 SWIB/MDM2 domain superfamily protein1.1e-2457.29Show/hide
Query:  PLPNLRFSRTITFASASNQTTASS-RQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEMNFV
        P   LR  R +T A+ S++ TA++ R PRGIMKPR +SPEMQ +V  PEI+RT+ALK IW +IKEH+LQ P +K+ I+CDEKLKKIF G+D + F+
Subjt:  PLPNLRFSRTITFASASNQTTASS-RQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEMNFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein2.0e-1342.53Show/hide
Query:  RTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEMNFV
        R +   +AS+    + RQ  GI+K   +S  +   +G  E+SRT A+K IW +IK +NLQ P +K+ I+CDE+LK IF GKD + F+
Subjt:  RTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEMNFV

AT3G03590.1 SWIB/MDM2 domain superfamily protein6.8e-1436.43Show/hide
Query:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR--GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHN
        M+ V+  V      L+A AS   SS+        P  +          +   + + + PR  GI K   +SP +   +G  E SRT+A+K IWT+IK H+
Subjt:  MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR--GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHN

Query:  LQKPSDKKIIICDEKLKKIFGGKDEMNFV
        LQ P+DK+ I CDE LK IF GKD++ F+
Subjt:  LQKPSDKKIIICDEKLKKIFGGKDEMNFV

AT4G34290.1 SWIB/MDM2 domain superfamily protein3.3e-2452.25Show/hide
Query:  SAVVSSVKHPYQLPLPNLRFSRTITFASASNQ---TTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKK
        S++  S  HP      NLR  R +T A+A++    TT  +R+PRGIMKPR +S  MQ +VG PEI RT+ALK IW +IKEH+LQ P +K+ I+CDEKLKK
Subjt:  SAVVSSVKHPYQLPLPNLRFSRTITFASASNQ---TTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKK

Query:  IFGGKDEMNFV
        IF GK+ + F+
Subjt:  IFGGKDEMNFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTCCTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTT
GCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCAGACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGG
CGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTAAGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGAAACCCAGCGACAAGAAAATCATAATATGC
GACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGACGAAATGAACTTTGTTTGTTCGTTTGTTTCGGGAGTCGCTCAGGTATTATTGCTCACTGAATCCTGCAGTTCATA
G
mRNA sequenceShow/hide mRNA sequence
GCCTCACCGCTTCATCCTCGCTCTATCCATTTTTCGAACGTGCACACAACCAGTCGTCAGTTCCGGCCATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTC
CTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCA
GACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTA
AGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGAAACCCAGCGACAAGAAAATCATAATATGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGACGAAATG
AACTTTGTTTGTTCGTTTGTTTCGGGAGTCGCTCAGGTATTATTGCTCACTGAATCCTGCAGTTCATAG
Protein sequenceShow/hide protein sequence
MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIIC
DEKLKKIFGGKDEMNFVCSFVSGVAQVLLLTESCSS