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CmoCh19G005810 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G005810
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionclassical arabinogalactan protein 9-like
Genome locationCmo_Chr19:6575141..6576155
RNA-Seq ExpressionCmoCh19G005810
SyntenyCmoCh19G005810
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR044981 - Lysine-rich arabinogalactan protein AGP9/17/18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571935.1 hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sororia]2.7e-4882.54Show/hide
Query:  MDPQALFCFTLIFVAFAVAGAQPPS-----------------------ISAPPPAT-PPATPPPASPPPATPPPASPPPATPPPAS-----PPPASPPPA
        MDPQALFC TLI +AFAVAGAQPPS                       +SAPPPAT PPATPPPASPPPATPPPASPPPATPPPAS     PPPASPPPA
Subjt:  MDPQALFCFTLIFVAFAVAGAQPPS-----------------------ISAPPPAT-PPATPPPASPPPATPPPASPPPATPPPAS-----PPPASPPPA

Query:  TPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN
        TPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN
Subjt:  TPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN

KAG7011623.1 hypothetical protein SDJN02_26529, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-4192.57Show/hide
Query:  AGAQPPSISAPPPAT-PPATPPPASPPPATPPPASPPPATPPPAS-----PPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPP
        + A PP +SAPPPAT PPATPPPASPPPATPPPASPPPATPPPAS     PPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPP
Subjt:  AGAQPPSISAPPPAT-PPATPPPASPPPATPPPASPPPATPPPAS-----PPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPP

Query:  AAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN
        AAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN
Subjt:  AAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN

XP_008455018.1 PREDICTED: classical arabinogalactan protein 9 [Cucumis melo]4.9e-3475.42Show/hide
Query:  MDPQA-LFCFTLIFVAFAVAGAQ-----------PPSISAPPPA-TPP--ATPPPAS--PPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPATP
        MDP+A L CFT I +AFA+AGAQ           PP+ SAPPPA TPP  ++PPPA+  PP ATPPPASPPPA+PPPASPPPA+PPPA+PPPASPPPA+P
Subjt:  MDPQA-LFCFTLIFVAFAVAGAQ-----------PPSISAPPPA-TPP--ATPPPAS--PPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPATP

Query:  PPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK-AAPGPAPVSSPPMPSAEGPGPAGP-ESPTPSQNDN
        PPASPPPA+PPPA+PPPA PPPAPLASPP AVPAPAPSKKK+K AAPGPAPVSSPP PS E PGPAGP +SPTPSQNDN
Subjt:  PPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK-AAPGPAPVSSPPMPSAEGPGPAGP-ESPTPSQNDN

XP_022952421.1 classical arabinogalactan protein 9-like [Cucurbita moschata]2.1e-5387.36Show/hide
Query:  MDPQALFCFTLIFVAFAVAGAQPPS----------------------ISAPPPATPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPATPPPASP
        MDPQALFCFTLIFVAFAVAGAQPPS                      +SAPPPATPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPATPPPASP
Subjt:  MDPQALFCFTLIFVAFAVAGAQPPS----------------------ISAPPPATPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPATPPPASP

Query:  PPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN
        PPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN
Subjt:  PPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN

XP_023553858.1 classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]1.0e-4783.24Show/hide
Query:  MDPQALFCFTLIFVAFAVAGAQPPS------------ISAPPPAT-------PPATPPPASPPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPA
        MDPQALFCFTLI +AFAVAGAQPPS             +APPPAT       PPATPPPASPPPATPPPASPPPATPPPASPPPA+PPPA+PPPA+PPPA
Subjt:  MDPQALFCFTLIFVAFAVAGAQPPS------------ISAPPPAT-------PPATPPPASPPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPA

Query:  TPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN
        +PPPA+PPPA+PPPATPPPATPPP PLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN
Subjt:  TPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN

TrEMBL top hitse value%identityAlignment
A0A0A0K6D8 Uncharacterized protein1.3e-3277.51Show/hide
Query:  MDPQALFCFTLIFVAFAVAGAQPPSISAPPPATP----PATPPPAS--PPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPATPPPASPPPATPP
        MDP+AL CFTLI +AF +A AQ P  S+PP ATP     +TPPP S  PP ATPPPASPPPA+PPPASPPPA+PPPA+PPPASPPPA+PPPASPPPATPP
Subjt:  MDPQALFCFTLIFVAFAVAGAQPPSISAPPPATP----PATPPPAS--PPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPATPPPASPPPATPP

Query:  PAT-PPPATPPPAPLASPPAAVPAPAPSKKKLK-AAPGPAPVSSPPMPSAEGPGPAGP-ESPTPSQNDN
        PA+ PPPATPPPAPLASPP AVPAPAPSKKK+K AAP P+PVSSPP PS E PGPAGP +SPTPSQNDN
Subjt:  PAT-PPPATPPPAPLASPPAAVPAPAPSKKKLK-AAPGPAPVSSPPMPSAEGPGPAGP-ESPTPSQNDN

A0A1S3BZW9 classical arabinogalactan protein 92.4e-3475.42Show/hide
Query:  MDPQA-LFCFTLIFVAFAVAGAQ-----------PPSISAPPPA-TPP--ATPPPAS--PPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPATP
        MDP+A L CFT I +AFA+AGAQ           PP+ SAPPPA TPP  ++PPPA+  PP ATPPPASPPPA+PPPASPPPA+PPPA+PPPASPPPA+P
Subjt:  MDPQA-LFCFTLIFVAFAVAGAQ-----------PPSISAPPPA-TPP--ATPPPAS--PPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPATP

Query:  PPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK-AAPGPAPVSSPPMPSAEGPGPAGP-ESPTPSQNDN
        PPASPPPA+PPPA+PPPA PPPAPLASPP AVPAPAPSKKK+K AAPGPAPVSSPP PS E PGPAGP +SPTPSQNDN
Subjt:  PPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK-AAPGPAPVSSPPMPSAEGPGPAGP-ESPTPSQNDN

A0A5A7SJX5 Classical arabinogalactan protein 92.4e-3475.42Show/hide
Query:  MDPQA-LFCFTLIFVAFAVAGAQ-----------PPSISAPPPA-TPP--ATPPPAS--PPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPATP
        MDP+A L CFT I +AFA+AGAQ           PP+ SAPPPA TPP  ++PPPA+  PP ATPPPASPPPA+PPPASPPPA+PPPA+PPPASPPPA+P
Subjt:  MDPQA-LFCFTLIFVAFAVAGAQ-----------PPSISAPPPA-TPP--ATPPPAS--PPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPATP

Query:  PPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK-AAPGPAPVSSPPMPSAEGPGPAGP-ESPTPSQNDN
        PPASPPPA+PPPA+PPPA PPPAPLASPP AVPAPAPSKKK+K AAPGPAPVSSPP PS E PGPAGP +SPTPSQNDN
Subjt:  PPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLK-AAPGPAPVSSPPMPSAEGPGPAGP-ESPTPSQNDN

A0A6J1GK65 classical arabinogalactan protein 9-like1.0e-5387.36Show/hide
Query:  MDPQALFCFTLIFVAFAVAGAQPPS----------------------ISAPPPATPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPATPPPASP
        MDPQALFCFTLIFVAFAVAGAQPPS                      +SAPPPATPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPATPPPASP
Subjt:  MDPQALFCFTLIFVAFAVAGAQPPS----------------------ISAPPPATPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPATPPPASP

Query:  PPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN
        PPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN
Subjt:  PPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN

A0A6J1I8J9 classical arabinogalactan protein 9-like3.4e-3368Show/hide
Query:  MDPQALFCFTLIFVAFAVAGAQPPSISAPPPATPPATPP----------------------------------------PASPPPATPPPASPPPATPPP
        MDPQALFCFTLI +AFAVAGAQPP  S+PP ATP   PP                                                   A+PPPA+PPP
Subjt:  MDPQALFCFTLIFVAFAVAGAQPPSISAPPPATPPATPP----------------------------------------PASPPPATPPPASPPPATPPP

Query:  ASPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN
        A+PPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPG APVSSPPMPSAEGPGPAGPESPTPSQNDN
Subjt:  ASPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDN

SwissProt top hitse value%identityAlignment
Q9C5S0 Classical arabinogalactan protein 92.2e-0856.71Show/hide
Query:  ALFCFTLIFVAFAVAGAQPPSISAPPPATPPATPPPASPPPATPPP---ASPPPAT--PPPASPPP--ASPPPATPPPASPPPATPPPASPPPATPPPAT
        A+ C  LI      A   PP+ + P P TP   PP A+PPP + PP    SPPP T  PPPA+PPP  +SPPPA+PPPA+PPP   PP  PP A+PPPAT
Subjt:  ALFCFTLIFVAFAVAGAQPPSISAPPPATPPATPPPASPPPATPPP---ASPPPAT--PPPASPPP--ASPPPATPPPASPPPATPPPASPPPATPPPAT

Query:  PPP-ATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE-SPTPSQND
        PPP ATPPPAPLASPPA VPAPAP+ K    +P P+P SSPP+PS++ PGP+    SP PS  D
Subjt:  PPP-ATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE-SPTPSQND

Arabidopsis top hitse value%identityAlignment
AT2G14890.1 arabinogalactan protein 91.5e-0956.71Show/hide
Query:  ALFCFTLIFVAFAVAGAQPPSISAPPPATPPATPPPASPPPATPPP---ASPPPAT--PPPASPPP--ASPPPATPPPASPPPATPPPASPPPATPPPAT
        A+ C  LI      A   PP+ + P P TP   PP A+PPP + PP    SPPP T  PPPA+PPP  +SPPPA+PPPA+PPP   PP  PP A+PPPAT
Subjt:  ALFCFTLIFVAFAVAGAQPPSISAPPPATPPATPPPASPPPATPPP---ASPPPAT--PPPASPPP--ASPPPATPPPASPPPATPPPASPPPATPPPAT

Query:  PPP-ATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE-SPTPSQND
        PPP ATPPPAPLASPPA VPAPAP+ K    +P P+P SSPP+PS++ PGP+    SP PS  D
Subjt:  PPP-ATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE-SPTPSQND

AT2G14890.2 arabinogalactan protein 94.0e-1055.17Show/hide
Query:  ALFCFTLIFVAFAVAGAQPPSISAPPPATPPATPPPASPPPATPPP---ASPPPAT--PPPASPPP--ASPPPATPPPASPPPATPPPASPPPATPPPAT
        A+ C  LI      A   PP+ + P P TP   PP A+PPP + PP    SPPP T  PPPA+PPP  +SPPPA+PPPA+PPP   PP  PP A+PPPAT
Subjt:  ALFCFTLIFVAFAVAGAQPPSISAPPPATPPATPPPASPPPATPPP---ASPPPAT--PPPASPPP--ASPPPATPPPASPPPATPPPASPPPATPPPAT

Query:  PPP-ATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE-SPTPSQ---NDNVSFIIY
        PPP ATPPPAPLASPPA VPAPAP+ K    +P P+P SSPP+PS++ PGP+    SP PS    ND VS + +
Subjt:  PPP-ATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE-SPTPSQ---NDNVSFIIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTCAAGCATTGTTTTGCTTCACTTTGATCTTCGTTGCCTTCGCCGTTGCCGGAGCTCAGCCCCCCTCCATATCAGCTCCCCCACCTGCCACTCCTCCTGCCAC
TCCCCCTCCGGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACCCCTCCTCCAGCTTCCCCACCTCCAGCTTCCCCACCACCAGCCACTCCTC
CTCCGGCATCCCCACCGCCGGCCACTCCTCCTCCAGCATCCCCACCACCGGCAACCCCACCACCTGCAACCCCACCACCAGCCACTCCACCTCCTGCACCACTGGCATCA
CCACCAGCGGCGGTTCCGGCTCCTGCACCCAGTAAGAAGAAGTTGAAGGCGGCTCCGGGTCCGGCCCCAGTTTCGAGCCCGCCGATGCCGTCGGCGGAGGGTCCAGGACC
CGCGGGCCCAGAATCTCCTACCCCATCTCAGAACGACAATGTAAGCTTCATTATATACTTCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTCAAGCATTGTTTTGCTTCACTTTGATCTTCGTTGCCTTCGCCGTTGCCGGAGCTCAGCCCCCCTCCATATCAGCTCCCCCACCTGCCACTCCTCCTGCCAC
TCCCCCTCCGGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACCCCTCCTCCAGCTTCCCCACCTCCAGCTTCCCCACCACCAGCCACTCCTC
CTCCGGCATCCCCACCGCCGGCCACTCCTCCTCCAGCATCCCCACCACCGGCAACCCCACCACCTGCAACCCCACCACCAGCCACTCCACCTCCTGCACCACTGGCATCA
CCACCAGCGGCGGTTCCGGCTCCTGCACCCAGTAAGAAGAAGTTGAAGGCGGCTCCGGGTCCGGCCCCAGTTTCGAGCCCGCCGATGCCGTCGGCGGAGGGTCCAGGACC
CGCGGGCCCAGAATCTCCTACCCCATCTCAGAACGACAATGTAAGCTTCATTATATACTTCGATTGA
Protein sequenceShow/hide protein sequence
MDPQALFCFTLIFVAFAVAGAQPPSISAPPPATPPATPPPASPPPATPPPASPPPATPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLAS
PPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDNVSFIIYFD