; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh19G006400 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G006400
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontype IV secretion system protein virB10-like
Genome locationCmo_Chr19:6934230..6934616
RNA-Seq ExpressionCmoCh19G006400
SyntenyCmoCh19G006400
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571994.1 hypothetical protein SDJN03_28722, partial [Cucurbita argyrosperma subsp. sororia]4.8e-66100Show/hide
Query:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL
        MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL
Subjt:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL

Query:  GGPPEIKQGADDKRENLQSAAPGTGGES
        GGPPEIKQGADDKRENLQSAAPGTGGES
Subjt:  GGPPEIKQGADDKRENLQSAAPGTGGES

KAG7011671.1 hypothetical protein SDJN02_26577, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-6497.69Show/hide
Query:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLD--PPPPPPPHLRHPPPLDAVPVVE
        MSTPVDQLQPPPTAHSG+GSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLD  PPPPPPPHLRHPPPLDAVPVVE
Subjt:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLD--PPPPPPPHLRHPPPLDAVPVVE

Query:  PLGGPPEIKQGADDKRENLQSAAPGTGGES
        PLGGPPEIKQGADDKRENLQSAAPGTGGES
Subjt:  PLGGPPEIKQGADDKRENLQSAAPGTGGES

XP_008455516.1 PREDICTED: type IV secretion system protein virB10-like [Cucumis melo]1.5e-5485.82Show/hide
Query:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLD---PPPPPPPHLRHPPPLDAVPVV
        MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE+WVEKKCASCLDGSLD   PPPPPPPHLRHPPPLD+VPV 
Subjt:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLD---PPPPPPPHLRHPPPLDAVPVV

Query:  EPLGG-PPEIKQG--ADDKRENLQSAAPGTGGES
        EPLGG PPEIKQG  AD K ENLQSAAPGTGGES
Subjt:  EPLGG-PPEIKQG--ADDKRENLQSAAPGTGGES

XP_022952791.1 uncharacterized protein LOC111455383 [Cucurbita moschata]4.1e-65100Show/hide
Query:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL
        MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL
Subjt:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL

Query:  GGPPEIKQGADDKRENLQSAAPGTGG
        GGPPEIKQGADDKRENLQSAAPGTGG
Subjt:  GGPPEIKQGADDKRENLQSAAPGTGG

XP_022972364.1 uncharacterized protein LOC111470940 [Cucurbita maxima]1.4e-6096.03Show/hide
Query:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL
        MSTP DQLQPPPTAHSG+GSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLD PPPPP HLRHPPPLDAVPVVEPL
Subjt:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL

Query:  GGPPEIKQGADDKRENLQSAAPGTGG
        GGPPEIKQGAD+KRENLQSAAPGTGG
Subjt:  GGPPEIKQGADDKRENLQSAAPGTGG

TrEMBL top hitse value%identityAlignment
A0A0A0K6N4 Uncharacterized protein3.0e-5384.21Show/hide
Query:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL
        MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYD+E+WVEKKCASCLDGSLD PPPPPPHLRHPPPLD+VPV EPL
Subjt:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL

Query:  GG-PPEIKQG----ADDKRENLQSAAPGTGGES
        GG PPEIKQ     AD K ENLQSAAPGTGGES
Subjt:  GG-PPEIKQG----ADDKRENLQSAAPGTGGES

A0A1S3C1T9 type IV secretion system protein virB10-like7.1e-5585.82Show/hide
Query:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLD---PPPPPPPHLRHPPPLDAVPVV
        MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE+WVEKKCASCLDGSLD   PPPPPPPHLRHPPPLD+VPV 
Subjt:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLD---PPPPPPPHLRHPPPLDAVPVV

Query:  EPLGG-PPEIKQG--ADDKRENLQSAAPGTGGES
        EPLGG PPEIKQG  AD K ENLQSAAPGTGGES
Subjt:  EPLGG-PPEIKQG--ADDKRENLQSAAPGTGGES

A0A5A7SPN0 Type IV secretion system protein virB10-like7.1e-5585.82Show/hide
Query:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLD---PPPPPPPHLRHPPPLDAVPVV
        MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE+WVEKKCASCLDGSLD   PPPPPPPHLRHPPPLD+VPV 
Subjt:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLD---PPPPPPPHLRHPPPLDAVPVV

Query:  EPLGG-PPEIKQG--ADDKRENLQSAAPGTGGES
        EPLGG PPEIKQG  AD K ENLQSAAPGTGGES
Subjt:  EPLGG-PPEIKQG--ADDKRENLQSAAPGTGGES

A0A6J1GL66 uncharacterized protein LOC1114553832.0e-65100Show/hide
Query:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL
        MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL
Subjt:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL

Query:  GGPPEIKQGADDKRENLQSAAPGTGG
        GGPPEIKQGADDKRENLQSAAPGTGG
Subjt:  GGPPEIKQGADDKRENLQSAAPGTGG

A0A6J1IBA8 uncharacterized protein LOC1114709406.6e-6196.03Show/hide
Query:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL
        MSTP DQLQPPPTAHSG+GSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLD PPPPP HLRHPPPLDAVPVVEPL
Subjt:  MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPL

Query:  GGPPEIKQGADDKRENLQSAAPGTGG
        GGPPEIKQGAD+KRENLQSAAPGTGG
Subjt:  GGPPEIKQGADDKRENLQSAAPGTGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G26520.1 unknown protein7.8e-1443.48Show/hide
Query:  QPPP----------TAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPP
        QPPP           + +G  ++GP IAV  V+++L V+A +IGRLCSG+ + GYG  YD+E W E +C SC+DG + P  P P     PPP
Subjt:  QPPP----------TAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPP

AT3G57500.1 unknown protein1.3e-1345.12Show/hide
Query:  QPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSL-------DPPPPPPP
        Q  P+ +S + S+  ++ VLAVI+IL V+AG+  RLC GR +  +G  +D+E WVE+KC SC+D  +        PPPPPPP
Subjt:  QPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSL-------DPPPPPPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGACCGCTCATTCCGGCTACGGCTCCGTCGGTCCAGTCATCGCCGTCCTCGCAGTCATTTCCATCCTCGGCGTCAT
CGCCGGCATTATCGGCCGTCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAGGAATGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCT
CCCTCGACCCTCCTCCGCCGCCGCCGCCGCATCTCCGCCACCCTCCGCCGCTCGATGCCGTTCCTGTAGTCGAACCCCTTGGTGGGCCGCCGGAAATCAAGCAAGGCGCC
GATGACAAACGCGAGAATTTGCAGTCGGCGGCTCCCGGAACCGGCGGTGAGTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGACCGCTCATTCCGGCTACGGCTCCGTCGGTCCAGTCATCGCCGTCCTCGCAGTCATTTCCATCCTCGGCGTCAT
CGCCGGCATTATCGGCCGTCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAGGAATGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCT
CCCTCGACCCTCCTCCGCCGCCGCCGCCGCATCTCCGCCACCCTCCGCCGCTCGATGCCGTTCCTGTAGTCGAACCCCTTGGTGGGCCGCCGGAAATCAAGCAAGGCGCC
GATGACAAACGCGAGAATTTGCAGTCGGCGGCTCCCGGAACCGGCGGTGAGTCGTGA
Protein sequenceShow/hide protein sequence
MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGA
DDKRENLQSAAPGTGGES