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CmoCh19G006430 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G006430
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionEmbryo defective
Genome locationCmo_Chr19:6952088..6954959
RNA-Seq ExpressionCmoCh19G006430
SyntenyCmoCh19G006430
Gene Ontology termsGO:0009658 - chloroplast organization (biological process)
GO:0071472 - cellular response to salt stress (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031273.1 uncharacterized protein E6C27_scaffold139G00260 [Cucumis melo var. makuwa]1.1e-1680.39Show/hide
Query:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYIAGFIKMK
        L+DLEVPWHLITIA+FF L+KLPGP +PYWGRIFIPH  NGD IAGFI+MK
Subjt:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYIAGFIKMK
KAG6571997.1 hypothetical protein SDJN03_28725, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1460.22Show/hide
Query:  MATHLQSSTKMALHAPVLLALRDLEVPWHLITIAMFFALVKLPGPNYPY-WGRIFIPHFTNGDYIAGFIKMKCSIERVNWSIGSYSTRRIMLR
        MATHLQSSTKMALHAPVLLALR            +F +LV     +      +         DYIAGFIKMKCSIERVNWSIGSYSTRRIMLR
Subjt:  MATHLQSSTKMALHAPVLLALRDLEVPWHLITIAMFFALVKLPGPNYPY-WGRIFIPHFTNGDYIAGFIKMKCSIERVNWSIGSYSTRRIMLR
XP_022136318.1 uncharacterized protein LOC111008035 [Momordica charantia]3.4e-1385.37Show/hide
Query:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG
        L+DLEVPWHLITIA+FF L+KLPGP YPYWGRIFIPHF NG
Subjt:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG
XP_022927689.1 uncharacterized protein LOC111434507 [Cucurbita moschata]3.4e-1385.37Show/hide
Query:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG
        L+DLEVPWHLITIA+FF LVKLPGP YPYWGRIF+PHF NG
Subjt:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG
XP_038889064.1 uncharacterized protein LOC120078811 [Benincasa hispida]6.9e-1478.72Show/hide
Query:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYIAGF
        L+DLEVPWHLITIA+FF L+KLPGP YPYWGRIFIPHFTNG     F
Subjt:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYIAGF
TrEMBL top hitse value%identityAlignment
A0A0A0K6P0 Uncharacterized protein2.8e-1377.27Show/hide
Query:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYI
        L+DLEVPWHLITIA+FF L+KLPGP+YPYWGRIFIPH  NG  +
Subjt:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYI
A0A5A7SM40 Uncharacterized protein5.5e-1780.39Show/hide
Query:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYIAGFIKMK
        L+DLEVPWHLITIA+FF L+KLPGP +PYWGRIFIPH  NGD IAGFI+MK
Subjt:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYIAGFIKMK
A0A6J1C7B2 uncharacterized protein LOC1110080351.7e-1385.37Show/hide
Query:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG
        L+DLEVPWHLITIA+FF L+KLPGP YPYWGRIFIPHF NG
Subjt:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG
A0A6J1EIP9 uncharacterized protein LOC1114345071.7e-1385.37Show/hide
Query:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG
        L+DLEVPWHLITIA+FF LVKLPGP YPYWGRIF+PHF NG
Subjt:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG
A0A6J1JED8 uncharacterized protein LOC1114861362.2e-1382.93Show/hide
Query:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG
        L+DLEVPWHLITIA+FF L+KLPGP YPYWGRIF+PHF NG
Subjt:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49510.1 embryo defective 12734.3e-1468.29Show/hide
Query:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG
        L++ EVPWHLI + MFF L+KLPGP YPYWGR+ +PHF NG
Subjt:  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGCACCTTCAAAGTTCCACTAAAATGGCCCTTCACGCCCCGGTTCTTCTAGCGCTTAGGGATCTAGAAGTGCCATGGCATTTGATCACCATTGCAATGTTCTT
CGCCCTCGTTAAACTGCCCGGCCCGAACTATCCATATTGGGGTCGGATATTCATACCGCATTTTACTAATGGGGATTACATTGCAGGCTTCATCAAAATGAAGTGTTCGA
TCGAGCGGGTGAACTGGTCGATAGGTTCTTATAGCACGAGACGGATTATGCTTCGGTGA
mRNA sequenceShow/hide mRNA sequence
CCCAGAATTTTTCAGAATTTGTGGCGGTTTATGGTGTCCGTGGACAAACCCTCCTTCCAAAACTGTGTGTTCATCCATCAACAGCTTTCAATTGAGGCGCAGCGATGGCG
ACGCACCTTCAAAGTTCCACTAAAATGGCCCTTCACGCCCCGGTTCTTCTAGCGCTTAGGGATCTAGAAGTGCCATGGCATTTGATCACCATTGCAATGTTCTTCGCCCT
CGTTAAACTGCCCGGCCCGAACTATCCATATTGGGGTCGGATATTCATACCGCATTTTACTAATGGGGATTACATTGCAGGCTTCATCAAAATGAAGTGTTCGATCGAGC
GGGTGAACTGGTCGATAGGTTCTTATAGCACGAGACGGATTATGCTTCGGTGATGGACCTCCGAGATAAGCATTAAATGAAGTCTAAAAAAATTGTGTATGTTCGAGAAC
AATCAAAATTTTCAAAATCATGTCACCATAATTCATATTACCAAATTACCCCCAAAATAATGTTGAATATCCCTATCGATTCCGTCT
Protein sequenceShow/hide protein sequence
MATHLQSSTKMALHAPVLLALRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYIAGFIKMKCSIERVNWSIGSYSTRRIMLR