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CmoCh19G006480 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G006480
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptioncytochrome b6f complex subunit (petM), putative
Genome locationCmo_Chr19:6999892..7002375
RNA-Seq ExpressionCmoCh19G006480
SyntenyCmoCh19G006480
Gene Ontology termsGO:0009512 - cytochrome b6f complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR012595 - PetM of cytochrome b6/f complex subunit 7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572003.1 Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. sororia]4.1e-5799.21Show/hide
Query:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFA+IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
Subjt:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        INGLVLVGVAVGFVLLRIEASVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

XP_022952989.1 uncharacterized protein LOC111455503 [Cucurbita moschata]1.8e-57100Show/hide
Query:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
Subjt:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        INGLVLVGVAVGFVLLRIEASVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

XP_022972366.1 uncharacterized protein LOC111470941 [Cucurbita maxima]5.5e-5496.03Show/hide
Query:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        MAAT SATLSP ISTAAPIAAGSRRQRNTNVHYITGLNSF GLKAHNNI SLGLPVCADQSFA+IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
Subjt:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        INGLVLVGVAVGFVLLRIEASVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

XP_023554105.1 uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo]2.5e-5496.03Show/hide
Query:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        MAAT SATLSPPISTAAPIAAGSRRQRN NVHYITGLNSF GLKAHNNI SLGLPVCADQSFA+IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
Subjt:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        INGLVLVGVAVGFVLLRIEASVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

XP_038887487.1 uncharacterized protein LOC120077620 [Benincasa hispida]4.4e-5191.13Show/hide
Query:  ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN
        AT SATLSP + TAAPIAAGSRRQR TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSFA+I+SSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVL+GVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

TrEMBL top hitse value%identityAlignment
A0A0A0K4W4 Uncharacterized protein1.5e-4988.71Show/hide
Query:  ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN
        AT SATLS  +S+AAPI+AGSRRQR TN H+I+GLNSFSGLKAHNN+ SLGLPVCADQSFA IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVL+GVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

A0A1S3C0U4 uncharacterized protein LOC1034952012.8e-5191.94Show/hide
Query:  ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN
        AT SATLS  +STAAPIAAGSRRQR TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSFA IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVL+GVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

A0A6J1C3G5 uncharacterized protein LOC1110080074.6e-4686.61Show/hide
Query:  ATPSATLSPPISTAAPIAAGSRR-QRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKN--GGGALSSTCNAAGEIFRIAA
        AT SATLSP +STAAPIAAGSRR QR+ NVHYITGLNSF GLKAHNN+ SLGLP+C D SFA IVSSLKYPSKGKGKN  GGGALSSTCNAAGEIFRIAA
Subjt:  ATPSATLSPPISTAAPIAAGSRR-QRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKN--GGGALSSTCNAAGEIFRIAA

Query:  IINGLVLVGVAVGFVLLRIEASVEEAE
        IINGLVLVGVAVGFVLLRIEA VEE E
Subjt:  IINGLVLVGVAVGFVLLRIEASVEEAE

A0A6J1GND2 uncharacterized protein LOC1114555038.9e-58100Show/hide
Query:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
Subjt:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        INGLVLVGVAVGFVLLRIEASVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

A0A6J1I5T0 uncharacterized protein LOC1114709412.7e-5496.03Show/hide
Query:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        MAAT SATLSP ISTAAPIAAGSRRQRNTNVHYITGLNSF GLKAHNNI SLGLPVCADQSFA+IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
Subjt:  MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        INGLVLVGVAVGFVLLRIEASVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

SwissProt top hitse value%identityAlignment
P80883 Cytochrome b6-f complex subunit 7 (Fragment)2.4e-0783.33Show/hide
Query:  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE
        NAA EIFRIAA++NGL LVGVA+GFVLLRIEA+VEE
Subjt:  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE

Arabidopsis top hitse value%identityAlignment
AT2G26500.1 cytochrome b6f complex subunit (petM), putative7.5e-2556.69Show/hide
Query:  AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQSFASIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAA
        AA P A +S   S     +  ++++    V YITGLNS+ GLKA NN + S+G P+C +Q FA++V SL      KG+ G GGALS+TCNA GEIF+IAA
Subjt:  AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQSFASIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAA

Query:  IINGLVLVGVAVGFVLLRIEASVEEAE
        I+N L LVGVAVGFVLLRIE SVEEAE
Subjt:  IINGLVLVGVAVGFVLLRIEASVEEAE

AT2G26500.2 cytochrome b6f complex subunit (petM), putative7.5e-2556.69Show/hide
Query:  AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQSFASIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAA
        AA P A +S   S     +  ++++    V YITGLNS+ GLKA NN + S+G P+C +Q FA++V SL      KG+ G GGALS+TCNA GEIF+IAA
Subjt:  AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQSFASIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAA

Query:  IINGLVLVGVAVGFVLLRIEASVEEAE
        I+N L LVGVAVGFVLLRIE SVEEAE
Subjt:  IINGLVLVGVAVGFVLLRIEASVEEAE

AT2G26500.3 cytochrome b6f complex subunit (petM), putative3.7e-0837.3Show/hide
Query:  AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI
        AA P A +S   S     +  ++++    V YITGLNS+ GLKA NN + S+G P+C +Q FA++V SLK                              
Subjt:  AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
               G  VGFVLLRIE SVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCT
CAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAGCATTGTGAGTTCTTTGAAATACCCATCAA
AGGGAAAAGGCAAAAACGGTGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCG
GTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTTAGCGAGCGCTCGTGCCCTCATATCAGCTTCCTTGGAGGCACAAATCACTGCTCCGAGCAT
TTCGTCTTTACCGTTCTCCACGATCCTCATGCTGCAGCCCTTAGGAACCAAGTTTGGAACCCATAGCATGAACCCCATGTTCATGAACCAACACCCTTGCAAAACAACCA
ATAACGAAAGAACAATGGCTGCTGGAAAGCAGGTAGGACAACAAGCAGCTACTATTACCGACACGAGCGATGCAAACACAATGAGCTGCAAGAGCCAATGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCT
CAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAGCATTGTGAGTTCTTTGAAATACCCATCAA
AGGGAAAAGGCAAAAACGGTGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCG
GTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTTAGCGAGCGCTCGTGCCCTCATATCAGCTTCCTTGGAGGCACAAATCACTGCTCCGAGCAT
TTCGTCTTTACCGTTCTCCACGATCCTCATGCTGCAGCCCTTAGGAACCAAGTTTGGAACCCATAGCATGAACCCCATGTTCATGAACCAACACCCTTGCAAAACAACCA
ATAACGAAAGAACAATGGCTGCTGGAAAGCAGGTAGGACAACAAGCAGCTACTATTACCGACACGAGCGATGCAAACACAATGAGCTGCAAGAGCCAATGGTAA
Protein sequenceShow/hide protein sequence
MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVA
VGFVLLRIEASVEEAELASARALISASLEAQITAPSISSLPFSTILMLQPLGTKFGTHSMNPMFMNQHPCKTTNNERTMAAGKQVGQQAATITDTSDANTMSCKSQW