; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh19G006790 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G006790
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like
Genome locationCmo_Chr19:7217768..7219325
RNA-Seq ExpressionCmoCh19G006790
SyntenyCmoCh19G006790
Gene Ontology termsNA
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022952105.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucurbita moschata]5.7e-40100Show/hide
Query:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

XP_022972526.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita maxima]1.6e-3796.81Show/hide
Query:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS+CRSLL AAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIA SLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

XP_023531748.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]1.0e-2879.79Show/hide
Query:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS+CRS+L A    GSRSMAGRTRTL   TL P+P SSSS+G  SVSRI SSLA+V+SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

XP_023553689.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]7.5e-4098.94Show/hide
Query:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS+CRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

XP_038887804.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [Benincasa hispida]3.1e-3084.04Show/hide
Query:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS+CRSLL AAA   SRSMAGRTRTLAH TL P+ VSSSSRGF SVSRI SSLA+V+SLMPLHSAVASARLKSKIAVDSHCW WLSEGF TPL
Subjt:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

TrEMBL top hitse value%identityAlignment
A0A1S3BGG1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like1.2e-2779.79Show/hide
Query:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS+ RSLL AAAA  SRSMAGRTR LAH TL P+ VSSSSR F S++RI SSLA+V+SLMPLH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Subjt:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

A0A5D3BYV0 Protein NUCLEAR FUSION DEFECTIVE 61.2e-2779.79Show/hide
Query:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS+ RSLL AAAA  SRSMAGRTR LAH TL P+ VSSSSR F S++RI SSLA+V+SLMPLH+AVASARLKSKIAVDSHCWSWLSEGFAT L
Subjt:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

A0A6J1C4G8 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial2.4e-2881.05Show/hide
Query:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPV-SSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MA++CRSLL AA   GSRS+AGRTRTL   TL P+PV SSSSRG  SVSRI SSLA+V+SLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPV-SSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

A0A6J1GKU0 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like2.8e-40100Show/hide
Query:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

A0A6J1I675 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial7.5e-3896.81Show/hide
Query:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS+CRSLL AAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIA SLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
Subjt:  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein5.7e-0638.96Show/hide
Query:  TRTLAHVTLKPVPVSSSSRGFISVSRIASS------LASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        ++T  H++  P P+ SSS    + SRI  S      L+   S++PLHSA+ASARL S ++V+S  W  + +G + PL
Subjt:  TRTLAHVTLKPVPVSSSSRGFISVSRIASS------LASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

AT1G55205.2 unknown protein1.4e-0438.89Show/hide
Query:  TRTLAHVTLKPVPVSSSSRGFISVSRIASS------LASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEG
        ++T  H++  P P+ SSS    + SRI  S      L+   S++PLHSA+ASARL S ++V+S  W  + +G
Subjt:  TRTLAHVTLKPVPVSSSSRGFISVSRIASS------LASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEG

AT3G13674.1 unknown protein4.9e-0535.71Show/hide
Query:  AHVTLKPVPVSSSSRGFISVSRIASSL---ASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        A+V+  P P+ S+S    +  R+  S      + S++PLHSA+AS+RL S ++V+S  W  + +G + PL
Subjt:  AHVTLKPVPVSSSSRGFISVSRIASSL---ASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

AT4G39300.1 unknown protein5.5e-1752Show/hide
Query:  MASICRSLLAAAAAGGSRSMAGRTRTLAH--VTLKPV----PVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL
        MAS CRS L A    GSR++  R+RT+    + LKP     P +S S+     SR+ S+L SV++++PLHSAVASARL+S IA DS CWS LS+G ATPL
Subjt:  MASICRSLLAAAAAGGSRSMAGRTRTLAH--VTLKPV----PVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL

AT4G39300.2 unknown protein1.5e-1448.48Show/hide
Query:  MASICRSLLAAAAAGGSRSMAGRTRTLAH--VTLKPV----PVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATP
        MAS CRS L A    GSR++  R+RT+    + LKP     P +S S+     SR+ S+L SV++++PLHSAVASARL+S IA DS CWS LS+    P
Subjt:  MASICRSLLAAAAAGGSRSMAGRTRTLAH--VTLKPV----PVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTTGCCGATCACTTCTAGCGGCGGCGGCGGCGGGGGGTTCGAGGTCTATGGCCGGCCGTACCAGAACACTGGCTCATGTAACCCTAAAACCAGTGCCTGT
TTCTTCTTCCTCCAGGGGCTTCATTTCCGTTTCCAGGATTGCTTCATCTTTGGCTTCTGTGGACTCTCTGATGCCACTCCACAGTGCCGTCGCCTCAGCTCGGCTTAAGT
CCAAAATTGCCGTCGACTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCTACGCCTTTGTGA
mRNA sequenceShow/hide mRNA sequence
TTTGAAGATCAGAAATGGCTTCCATTTGCCGATCACTTCTAGCGGCGGCGGCGGCGGGGGGTTCGAGGTCTATGGCCGGCCGTACCAGAACACTGGCTCATGTAACCCTA
AAACCAGTGCCTGTTTCTTCTTCCTCCAGGGGCTTCATTTCCGTTTCCAGGATTGCTTCATCTTTGGCTTCTGTGGACTCTCTGATGCCACTCCACAGTGCCGTCGCCTC
AGCTCGGCTTAAGTCCAAAATTGCCGTCGACTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCTACGCCTTTGTGACATAACAGTCGGTGAAGACAAATTGTAATTG
ATAAAACAGCTTAGTGACTGGTAGCTGAAACGACCTTCCGTAGGACTTGCAAGGTTTTTCATCTTTTCAACGTATCTTTGCAAGATACCTTTATCACATGAAAGAATCAT
TTAGACAATTGTTGTTTAGTTTTGATCATTGTATAATGCAATGCGGCCACATTTTCTGGATATGCAGAGAGCTATTGTTTTGAGCCTCTGACCACAACCCCCGAGAGATT
GGATTTTCGTTAGGCGTCTCTTTGTTGCTCTTGACTTTGTTCAATACCATGCAATTGATCTTCTCTATTCTCTAAGTATGGGGTCTTGGGCTGATGTCCAATACTTTTAC
TACATTGTG
Protein sequenceShow/hide protein sequence
MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSLMPLHSAVASARLKSKIAVDSHCWSWLSEGFATPL