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CmoCh19G006830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G006830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein RADIALIS-like 1
Genome locationCmo_Chr19:7249135..7250482
RNA-Seq ExpressionCmoCh19G006830
SyntenyCmoCh19G006830
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572042.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]3.8e-31100Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMKINGAKLMQ
        MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMKINGAKLMQ
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMKINGAKLMQ

KAG7011710.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-1871.43Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVLM--------NKVVRNMKIN
        MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE  + Y++++         N ++RNMK +
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVLM--------NKVVRNMKIN

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]3.8e-1574.14Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL
        MASMS+HGSSAWTA++NKAFEKALAV+DQDTPERW+NVAKA+GGKT +E  + YE+++
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL

XP_022952660.1 protein RADIALIS-like 1 [Cucurbita moschata]2.8e-1880Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMK
        MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE      L+ K V++++
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMK

XP_022972544.1 protein RADIALIS-like 1 [Cucurbita maxima]8.1e-1885.25Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE-KLYEIVLMNKV
        MASMSAHGSSAWTARENKAFEKALAVFDQDTP+RWVNVAKAIGGKTEDE K +  +L+N V
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE-KLYEIVLMNKV

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein8.2e-1677.59Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL
        MASMSAHGSSAWTA ENKAFEKALA++D+DTPERW+NVAKAIGGKTE+E  + Y+++L
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL

A0A6J1C385 protein RADIALIS-like 11.8e-1574.14Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL
        MASMS+HGSSAWTA++NKAFEKALAV+DQDTPERW+NVAKA+GGKT +E  + YE+++
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL

A0A6J1GKK4 protein RADIALIS-like 11.5e-1468.18Show/hide
Query:  MASMSAHGSS-AWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMK
        MASMSAHGS+ +WTA++NKAFEKALAV+DQDTPERW+NVAKAIGGKTE+E      L+ K V+ ++
Subjt:  MASMSAHGSS-AWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMK

A0A6J1GKV1 protein RADIALIS-like 11.4e-1880Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMK
        MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE      L+ K V++++
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMK

A0A6J1I8Y0 protein RADIALIS-like 13.9e-1885.25Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE-KLYEIVLMNKV
        MASMSAHGSSAWTARENKAFEKALAVFDQDTP+RWVNVAKAIGGKTEDE K +  +L+N V
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE-KLYEIVLMNKV

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.4e-1255.93Show/hide
Query:  ASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVLMN
        +SMS+  S +WTA++NKAFE+ALA +DQDTP RW NVAK +GGKT +E  + YE+++ +
Subjt:  ASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVLMN

Q1A173 Protein RADIALIS-like 61.7e-1056.9Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL
        MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+GGKT +E  + Y+I++
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL

Q6NNN0 Protein RADIALIS-like 32.0e-1155.17Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL
        MAS S   S++WT +ENK FE+ALA +DQDTP+RW NVA+A+GGK+ +E  + YE+++
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL

Q8GW75 Protein RADIALIS-like 52.6e-1155.17Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL
        MAS S   SS+WT+++NK FE+ALAV+D+DTP+RW NVAKA+G K+ +E  + Y+I++
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL

Q9SIJ5 Protein RADIALIS-like 23.7e-1352.38Show/hide
Query:  SMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMK
        SMS++GS +WT ++NKAFE+ALAV+DQDTP+RW NVA+A+GGKT +E   +  L+ + + +++
Subjt:  SMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMK

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.9e-1255.17Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL
        MAS S   SS+WT+++NK FE+ALAV+D+DTP+RW NVAKA+G K+ +E  + Y+I++
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL

AT1G75250.1 RAD-like 61.2e-1156.9Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL
        MAS S    S WT  +NK FE+ALAV+D+DTP+RW NVAKA+GGKT +E  + Y+I++
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVL

AT2G21650.1 Homeodomain-like superfamily protein2.6e-1452.38Show/hide
Query:  SMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMK
        SMS++GS +WT ++NKAFE+ALAV+DQDTP+RW NVA+A+GGKT +E   +  L+ + + +++
Subjt:  SMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMK

AT4G36570.1 RAD-like 32.4e-1261.22Show/hide
Query:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE
        MAS S   S++WT +ENK FE+ALA +DQDTP+RW NVA+A+GGK+ +E
Subjt:  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE

AT4G39250.1 RAD-like 11.7e-1355.93Show/hide
Query:  ASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVLMN
        +SMS+  S +WTA++NKAFE+ALA +DQDTP RW NVAK +GGKT +E  + YE+++ +
Subjt:  ASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDE--KLYEIVLMN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTGCTCATGGGTCAAGTGCATGGACTGCAAGAGAAAACAAAGCGTTTGAGAAAGCTTTGGCTGTGTTTGATCAAGACACACCTGAGAGATGGGTCAA
TGTTGCTAAGGCCATTGGTGGAAAAACTGAAGATGAAAAGCTCTACGAGATTGTGCTGATGAACAAGGTCGTGAGAAACATGAAGATCAATGGAGCTAAGCTCATGCAGT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCTGCTCATGGGTCAAGTGCATGGACTGCAAGAGAAAACAAAGCGTTTGAGAAAGCTTTGGCTGTGTTTGATCAAGACACACCTGAGAGATGGGTCAA
TGTTGCTAAGGCCATTGGTGGAAAAACTGAAGATGAAAAGCTCTACGAGATTGTGCTGATGAACAAGGTCGTGAGAAACATGAAGATCAATGGAGCTAAGCTCATGCAGT
AATGGAAGAATAAAGGAAGGAAAACGAAGAACCATTTGCTTCCAATTGTACTTCTAACTGTAACGTAGCATTGAACGAATAAGATTTCTTGGTGTTTTCTTTTTCAAAAC
TATCATCCATCTCCAATTTTGGCCTTCCAAAGTTGATCAGCAAATACTACTAATAAAAACAACTAATCAATCCA
Protein sequenceShow/hide protein sequence
MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEKLYEIVLMNKVVRNMKINGAKLMQ