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CmoCh19G006840 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G006840
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein RADIALIS-like 1
Genome locationCmo_Chr19:7253445..7254840
RNA-Seq ExpressionCmoCh19G006840
SyntenyCmoCh19G006840
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036170.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]4.1e-3492.41Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
        MASMSAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYR+SRG+
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS

XP_004151116.1 protein RADIALIS-like 1 [Cucumis sativus]2.0e-3391.14Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
        MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYRSSR +
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]1.2e-3391.14Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
        MASMSAHGSGVWTAKQNKAFE+ALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYR+SRG+
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS

XP_022952073.1 protein RADIALIS-like 1 [Cucurbita moschata]1.1e-36100Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
        MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS

XP_038888369.1 protein RADIALIS-like 1 [Benincasa hispida]1.8e-2984.62Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRG
        MASMS+HGSG WTAKQNKAFE+ALA+YDQD PDRWLNVAKA+GGKT EEVK HY +LVEDVK IESG+VPFPYRSSRG
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRG

TrEMBL top hitse value%identityAlignment
A0A0A0K344 SANT domain-containing protein9.8e-3491.14Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
        MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYRSSR +
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS

A0A1S3BGF6 protein RADIALIS-like 15.7e-3491.14Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
        MASMSAHGSGVWTAKQNKAFE+ALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYR+SRG+
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS

A0A5A7SYM4 Protein RADIALIS-like 12.0e-3492.41Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
        MASMSAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYR+SRG+
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS

A0A6J1GJG0 protein RADIALIS-like 15.6e-37100Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
        MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS

A0A6J1IA78 protein RADIALIS-like 15.6e-37100Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
        MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 16.1e-2569.23Show/hide
Query:  ASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRG
        +SMS+  SG WTAKQNKAFE+ALA YDQD P+RW NVAK +GGKT EEVKRHY++LV+D+  IE+G VPFP YR+S G
Subjt:  ASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRG

Q1A173 Protein RADIALIS-like 62.7e-2065.28Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP
        MAS S      WT  QNK FE ALA+YD+D PDRW NVAKA+GGKT EEVKRHY +LVED+ +IE+G+VP P
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP

Q58FS3 Transcription factor RADIALIS2.6e-2366.23Show/hide
Query:  SAHGSG-VWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRGS
        S  GSG  W+AK+NKAFE ALA+YD+D PDRW NVA+A+ G+T EEVK+HY++LVED+K+IESGKVPFP YR++ G+
Subjt:  SAHGSG-VWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRGS

Q6NNN0 Protein RADIALIS-like 31.2e-2059.49Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS
        MAS S   S  WT K+NK FE ALA YDQD PDRW NVA+A+GGK+ EEV+RHY++L+ DV  IESG+ P P   S G+
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS

Q9SIJ5 Protein RADIALIS-like 21.2e-2365.38Show/hide
Query:  SMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRGS
        SMS++GSG WT KQNKAFE ALA+YDQD PDRW NVA+A+GGKT EE KR Y +LV D++ IE+G VPFP Y+++ G+
Subjt:  SMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRGS

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.2e-2163.89Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP
        MAS S   S  WT+KQNK FE ALA+YD+D PDRW NVAKA+G K+ EEVKRHY +LVED+ +IE   VP P
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP

AT1G75250.1 RAD-like 61.9e-2165.28Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP
        MAS S      WT  QNK FE ALA+YD+D PDRW NVAKA+GGKT EEVKRHY +LVED+ +IE+G+VP P
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP

AT1G75250.2 RAD-like 61.9e-2165.28Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP
        MAS S      WT  QNK FE ALA+YD+D PDRW NVAKA+GGKT EEVKRHY +LVED+ +IE+G+VP P
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP

AT2G21650.1 Homeodomain-like superfamily protein8.2e-2565.38Show/hide
Query:  SMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRGS
        SMS++GSG WT KQNKAFE ALA+YDQD PDRW NVA+A+GGKT EE KR Y +LV D++ IE+G VPFP Y+++ G+
Subjt:  SMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRGS

AT4G39250.1 RAD-like 14.4e-2669.23Show/hide
Query:  ASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRG
        +SMS+  SG WTAKQNKAFE+ALA YDQD P+RW NVAK +GGKT EEVKRHY++LV+D+  IE+G VPFP YR+S G
Subjt:  ASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFP-YRSSRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCACATTACTTACTTCTCTTTACATGCTTCTTATGAAAATTCCGAACAGCCAAATCTCCTCAAACTTAGCAATATCATCAATGGCTTCAATGTCGGCTCATGGGTC
GGGTGTATGGACTGCAAAGCAAAACAAGGCGTTTGAGGAGGCTTTGGCAATGTATGATCAAGACAGGCCTGATCGATGGCTGAATGTTGCTAAGGCCATTGGTGGAAAAA
CTGAAGAGGAAGTGAAAAGGCATTACCAAGTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGCAAGGTTCCTTTTCCTTATCGAAGCTCAAGAGGCAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCACATTACTTACTTCTCTTTACATGCTTCTTATGAAAATTCCGAACAGCCAAATCTCCTCAAACTTAGCAATATCATCAATGGCTTCAATGTCGGCTCATGGGTC
GGGTGTATGGACTGCAAAGCAAAACAAGGCGTTTGAGGAGGCTTTGGCAATGTATGATCAAGACAGGCCTGATCGATGGCTGAATGTTGCTAAGGCCATTGGTGGAAAAA
CTGAAGAGGAAGTGAAAAGGCATTACCAAGTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGCAAGGTTCCTTTTCCTTATCGAAGCTCAAGAGGCAGCTAA
Protein sequenceShow/hide protein sequence
MVTLLTSLYMLLMKIPNSQISSNLAISSMASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS