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CmoCh19G006880 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G006880
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein RADIALIS-like 3
Genome locationCmo_Chr19:7277180..7277781
RNA-Seq ExpressionCmoCh19G006880
SyntenyCmoCh19G006880
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572047.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4096.59Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR
        MA+SSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDL RIESG VPIPNYRGVHNGDEELR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR

XP_022952671.1 protein RADIALIS-like 3 [Cucurbita moschata]2.6e-42100Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR

XP_022975322.1 protein RADIALIS-like 3 [Cucurbita maxima]1.9e-4096.59Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERWHNIAMAVGGKSADEVKRHYEILLEDL RIESGRVPIPNYRG HNGDEELR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR

XP_023554816.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]3.7e-4197.73Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDL RIESGRVPIPNYRG HNGDEELR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR

XP_038888996.1 protein RADIALIS-like 3 isoform X2 [Benincasa hispida]1.1e-3792.05Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKS DEVKRHYE+LLEDL RIESGRVPIPNYRG  N DEELR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR

TrEMBL top hitse value%identityAlignment
A0A0A0K2A2 SANT domain-containing protein4.3e-3587.5Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEILLEDL RIESGRVPIPNYR   N DEELR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR

A0A1S3BHB0 protein RADIALIS-like 31.5e-3587.5Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEILLEDL +IESGRVPIPNYRG  N DEELR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR

A0A5D3DF44 Protein RADIALIS-like 34.3e-3586.36Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSA+EV+RHYEILLEDL +IESGRVPIPNYRG  N DEELR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR

A0A6J1GKW1 protein RADIALIS-like 31.3e-42100Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR

A0A6J1ICR6 protein RADIALIS-like 39.0e-4196.59Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERWHNIAMAVGGKSADEVKRHYEILLEDL RIESGRVPIPNYRG HNGDEELR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.4e-2259.3Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYR---GVHNG
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RW N+A  VGGK+ +EVKRHYE+L++D+  IE+G VP PNYR   G  NG
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYR---GVHNG

Q1A173 Protein RADIALIS-like 63.3e-2464.1Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RWHN+A AVGGK+ +EVKRHY+IL+EDL+ IE+GRVP+PNY+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYR

Q58FS3 Transcription factor RADIALIS1.0e-2065.62Show/hide
Query:  WTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYR
        W+AK+NK FE+ALA+YDK+TP+RW N+A AV G++ +EVK+HYEIL+ED+  IESG+VP PNYR
Subjt:  WTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYR

Q6NNN0 Protein RADIALIS-like 31.6e-2362.2Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHN
        MAS+S+      A+WT K+NKLFE+ALA YD++TP+RWHN+A AVGGKSA+EV+RHYE+L+ D+  IESGR P PNYR   N
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHN

Q8GW75 Protein RADIALIS-like 52.8e-2358.82Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDE
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RW N+A AVG KSA+EVKRHY+IL+EDL+ IE   VP+P Y+ V  G +
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDE

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.0e-2458.82Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDE
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RW N+A AVG KSA+EVKRHY+IL+EDL+ IE   VP+P Y+ V  G +
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDE

AT1G75250.1 RAD-like 62.4e-2564.1Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RWHN+A AVGGK+ +EVKRHY+IL+EDL+ IE+GRVP+PNY+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYR

AT1G75250.2 RAD-like 62.4e-2564.1Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RWHN+A AVGGK+ +EVKRHY+IL+EDL+ IE+GRVP+PNY+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYR

AT2G18328.1 RAD-like 46.0e-2158.02Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVH
        MASSS+      ++WTA+++K FE ALA +DK+TP+RW  IA AVGGKS +EVKRHYE+LL D+  IESGR P P YR  +
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVH

AT4G39250.1 RAD-like 19.9e-2459.3Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYR---GVHNG
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RW N+A  VGGK+ +EVKRHYE+L++D+  IE+G VP PNYR   G  NG
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYR---GVHNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGAGCTCTTTAAAACAACAACGTCCCGAGGCGACATGGACAGCCAAGCAAAACAAGCTGTTTGAGAAGGCGTTGGCTTTGTACGACAAAGAGACGCCTGAGCG
ATGGCACAATATCGCCATGGCAGTCGGTGGGAAGTCGGCCGACGAAGTTAAAAGACATTACGAGATTCTCTTGGAAGATCTCCTGCGGATCGAGTCGGGCCGTGTTCCTA
TTCCAAATTACAGAGGCGTCCACAATGGAGATGAAGAGTTGAGGTATTAA
mRNA sequenceShow/hide mRNA sequence
ATACACATATAAATCACTCTCATTTCTCCATTGGATCTCAACCAAAACAACCAAAACCCCATCTCCAAATTTTTCTTCTTTTCTTCGCCAATGGCTTCGAGCTCTTTAAA
ACAACAACGTCCCGAGGCGACATGGACAGCCAAGCAAAACAAGCTGTTTGAGAAGGCGTTGGCTTTGTACGACAAAGAGACGCCTGAGCGATGGCACAATATCGCCATGG
CAGTCGGTGGGAAGTCGGCCGACGAAGTTAAAAGACATTACGAGATTCTCTTGGAAGATCTCCTGCGGATCGAGTCGGGCCGTGTTCCTATTCCAAATTACAGAGGCGTC
CACAATGGAGATGAAGAGTTGAGGTATTAA
Protein sequenceShow/hide protein sequence
MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELRY