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CmoCh19G006970 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G006970
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNuclear polyadenylated RNA-binding protein 3-like
Genome locationCmo_Chr19:7369711..7370292
RNA-Seq ExpressionCmoCh19G006970
SyntenyCmoCh19G006970
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572059.1 hypothetical protein SDJN03_28787, partial [Cucurbita argyrosperma subsp. sororia]9.8e-9594.95Show/hide
Query:  MEAMSGA----SSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISL-AEDRIFDPLE
        MEAMSGA    SSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARI EDLRE+ISPVVVVPISL AEDRIFDPLE
Subjt:  MEAMSGA----SSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISL-AEDRIFDPLE

Query:  DVYFLQNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        DVYFLQNHAEDGFAYGYN+AEED+TDKDD DDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  DVYFLQNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

KAG7011726.1 hypothetical protein SDJN02_26632, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-9494.44Show/hide
Query:  MEAMSGA----SSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISL-AEDRIFDPLE
        MEAMSGA    SSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARI EDLRE+ISPVVVVPISL AEDRIFDPLE
Subjt:  MEAMSGA----SSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISL-AEDRIFDPLE

Query:  DVYFLQNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        DVYFLQNHAEDGFAYGYN+AEE++TDKDD DDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  DVYFLQNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_011658549.2 uncharacterized protein LOC101212092 [Cucumis sativus]5.0e-7578.24Show/hide
Query:  MEAMSGASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDVYFL
        MEA+SG+SSSSSSS+EF FYDDFEYEFVED+ERLSNWE L+A DADSEM GNGGE++G NC V   + +DLRE+ISPV+ VPISL EDRI   LED YFL
Subjt:  MEAMSGASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDVYFL

Query:  QNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
         N AEDGFAYGYN+AEE+       + DDDEDE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  QNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_022969470.1 uncharacterized protein LOC111468462 [Cucurbita maxima]1.6e-9795.92Show/hide
Query:  MEAMSGA---SSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDV
        MEAMSGA   SSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARI EDL E+ISPVVVVPISLAEDRIFDPLEDV
Subjt:  MEAMSGA---SSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDV

Query:  YFLQNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        YFLQNHAEDGFAYGYN+AEED+TDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  YFLQNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_023553634.1 histone H2A.Z-specific chaperone CHZ1-like [Cucurbita pepo subsp. pepo]3.6e-9795.92Show/hide
Query:  MEAMSGASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDVYFL
        MEAMSGASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARI EDLREIISPVVVVPISLAEDRIFDPLEDVYFL
Subjt:  MEAMSGASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDVYFL

Query:  QNHAEDGFAYGYNEAEEDQTDK---DDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        QNHAEDGFAYGYN+AEED+ DK   DD DDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  QNHAEDGFAYGYNEAEEDQTDK---DDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

TrEMBL top hitse value%identityAlignment
A0A0A0K4F3 Uncharacterized protein2.4e-7578.24Show/hide
Query:  MEAMSGASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDVYFL
        MEA+SG+SSSSSSS+EF FYDDFEYEFVED+ERLSNWE L+A DADSEM GNGGE++G NC V   + +DLRE+ISPV+ VPISL EDRI   LED YFL
Subjt:  MEAMSGASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDVYFL

Query:  QNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
         N AEDGFAYGYN+AEE+       + DDDEDE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  QNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A1S3BJG2 uncharacterized protein LOC1034903566.2e-7174.37Show/hide
Query:  MEAMSG------ASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPL
        MEA+SG      +SSSSSSS+EF FYDDFEYEFVED+ERLSNWE L+A DADSEM GNGGE++G+N  V   + +DLRE+ISPV+ VPISL EDRI   L
Subjt:  MEAMSG------ASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPL

Query:  EDVYFLQNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        ED  FL N AEDGFAYGY++AEE     +D  DD++EDE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  EDVYFLQNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A5A7SRG7 Nuclear polyadenylated RNA-binding protein 3-like2.1e-7176.68Show/hide
Query:  MEAMSGASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDVYFL
        MEA+SG  SSSSSS+EF FYDDFEYEFVED+ERLSNWE L+A DADSEM GNGGE++G+N  V   + +DLRE+ISPV+ VPISL EDRI   LED  FL
Subjt:  MEAMSGASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDVYFL

Query:  QNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
         N AEDGFAYGY++AEE     +D  DDD+EDE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  QNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A6J1F1D0 NAD-dependent protein deacetylase HST1-like2.7e-6672.14Show/hide
Query:  MEAMSGASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGG--------EKEGKNCCVVARIHEDLREIISPVVVVPI-SLAEDRIF
        MEA SGA+SSSSSSVEF F+DD EYEFVE+VERLSNWE L+ASDAD E+DGNG         E+EG++C V  R+ +DLR     VV +PI SL E+RI 
Subjt:  MEAMSGASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGG--------EKEGKNCCVVARIHEDLREIISPVVVVPI-SLAEDRIF

Query:  DPLEDVYFLQNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKH
         P +DVY LQN  E+GFAYG N+ EED++D D  DDDDD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKH
Subjt:  DPLEDVYFLQNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKH

Query:  S
        S
Subjt:  S

A0A6J1I004 uncharacterized protein LOC1114684627.8e-9895.92Show/hide
Query:  MEAMSGA---SSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDV
        MEAMSGA   SSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARI EDL E+ISPVVVVPISLAEDRIFDPLEDV
Subjt:  MEAMSGA---SSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDV

Query:  YFLQNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        YFLQNHAEDGFAYGYN+AEED+TDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  YFLQNHAEDGFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G34630.1 unknown protein1.1e-1455.95Show/hide
Query:  GFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLK
        G  Y       D  + D  +D + +D  DLD+ELVP SVS K+GRQRMRKLGKR   ++Y SK SPFL  KPG VRGKHGLG+K
Subjt:  GFAYGYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLK

AT5G48420.1 unknown protein2.2e-0444Show/hide
Query:  DQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFT--KPGCVRGKHGLGLK
        D  D D+ DD D  D+LD D ELV          QR+RK GKR F +    K+  + ++  KPGCV GKHGL +K
Subjt:  DQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFT--KPGCVRGKHGLGLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCCATGTCTGGAGCTTCGTCATCTTCCTCATCGTCTGTGGAATTCCATTTTTACGATGATTTCGAGTATGAATTTGTTGAAGATGTCGAACGCCTTTCGAACTG
GGAGTTCCTCAATGCTTCTGATGCCGATTCAGAAATGGACGGAAATGGAGGCGAAAAAGAGGGTAAAAATTGCTGCGTCGTTGCTCGAATTCATGAAGATCTCCGAGAAA
TTATTTCTCCTGTTGTTGTGGTGCCGATTTCTCTTGCGGAGGATCGGATCTTTGATCCTTTGGAAGATGTTTATTTCCTTCAGAATCACGCGGAGGACGGTTTTGCGTAC
GGTTACAACGAGGCGGAGGAGGATCAAACCGACAAAGACGACGGCGACGACGACGATGATGAAGATGAGTTAGATTTGGACGATGAACTCGTTCCGTGGTCTGTCAGTGA
CAAACTCGGACGGCAGCGGATGAGGAAATTGGGGAAAAGAGGATTTACAAGGATGTATAATTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGCGTCCGCGGCA
AGCACGGACTCGGCTTGAAGCATAGTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCCATGTCTGGAGCTTCGTCATCTTCCTCATCGTCTGTGGAATTCCATTTTTACGATGATTTCGAGTATGAATTTGTTGAAGATGTCGAACGCCTTTCGAACTG
GGAGTTCCTCAATGCTTCTGATGCCGATTCAGAAATGGACGGAAATGGAGGCGAAAAAGAGGGTAAAAATTGCTGCGTCGTTGCTCGAATTCATGAAGATCTCCGAGAAA
TTATTTCTCCTGTTGTTGTGGTGCCGATTTCTCTTGCGGAGGATCGGATCTTTGATCCTTTGGAAGATGTTTATTTCCTTCAGAATCACGCGGAGGACGGTTTTGCGTAC
GGTTACAACGAGGCGGAGGAGGATCAAACCGACAAAGACGACGGCGACGACGACGATGATGAAGATGAGTTAGATTTGGACGATGAACTCGTTCCGTGGTCTGTCAGTGA
CAAACTCGGACGGCAGCGGATGAGGAAATTGGGGAAAAGAGGATTTACAAGGATGTATAATTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGCGTCCGCGGCA
AGCACGGACTCGGCTTGAAGCATAGTTATTAG
Protein sequenceShow/hide protein sequence
MEAMSGASSSSSSSVEFHFYDDFEYEFVEDVERLSNWEFLNASDADSEMDGNGGEKEGKNCCVVARIHEDLREIISPVVVVPISLAEDRIFDPLEDVYFLQNHAEDGFAY
GYNEAEEDQTDKDDGDDDDDEDELDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY