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CmoCh19G008450 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G008450
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-type domain-containing protein
Genome locationCmo_Chr19:8218821..8222913
RNA-Seq ExpressionCmoCh19G008450
SyntenyCmoCh19G008450
Gene Ontology termsGO:0006810 - transport (biological process)
GO:0009987 - cellular process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016020 - membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589096.1 AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2869.47Show/hide
Query:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLH
        MISLALGRG  C+ATIV +TCVWIPLCQLK  +ESMIG+LSG T Q LT E  P EVKLP+CRFKEL R    EE+ICSVCLA FTG+DL   +H
Subjt:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLH

KAG7022803.1 AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-2769.23Show/hide
Query:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLV
        MISLALGRG  C+ATIV +TCVWIPLCQLK  +ESMIG+LSG T Q LT E  P EVKLP+CRF+EL R    EE+ICSVCLA +TG+DL+
Subjt:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLV

VVA26628.1 PREDICTED: AP-1 complex subunit [Prunus dulcis]6.9e-2745.11Show/hide
Query:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPW--EVKLPICRFKELQRRGGME------EEICSVCLAEFTGDDLVS
        MI L + +  + MATI FYTC WIPL Q+K A+  ++G +  +TCQ    E      ++ LP+ RF++LQ  G +       EE CS+CL EF  +D+VS
Subjt:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPW--EVKLPICRFKELQRRGGME------EEICSVCLAEFTGDDLVS

Query:  RLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF
        +L +C H+FH++CIE W+ R HFTCP+CRS  F
Subjt:  RLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF

XP_012481249.1 PREDICTED: RING-H2 finger protein ATL18-like [Gossypium raimondii]9.0e-2745.74Show/hide
Query:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGG----MEEEICSVCLAEFTGDDLVSRLHR
        MISL       C A ++FYTCVWIP  Q K+ + S++G +   +C  +        V LP+ RF++L+   G     EEE+CS+CL EF  DD VS++ +
Subjt:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGG----MEEEICSVCLAEFTGDDLVSRLHR

Query:  CSHLFHVECIENWLHRDHFTCPLCRSFLF
        C H+FH+ CIE W+ R HFTCPLCRS LF
Subjt:  CSHLFHVECIENWLHRDHFTCPLCRSFLF

XP_022762435.1 RING-H2 finger protein ATL18-like [Durio zibethinus]6.9e-2746.38Show/hide
Query:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGW-----TCQPLTTESAPWEVKLPICRFKELQRRGGME--------EEICSVCLAEFTG
        MISL      +  A ++FYTCVWIP  QLK A+  ++G +  W     +CQ +        V LP+ RF++L+   G          EE+CS+CL EF  
Subjt:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGW-----TCQPLTTESAPWEVKLPICRFKELQRRGGME--------EEICSVCLAEFTG

Query:  DDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF
        +D+VS+LH+C HLFH+ CIE WL RD FTCPLCRSFLF
Subjt:  DDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF

TrEMBL top hitse value%identityAlignment
A0A0A0K513 RING-type domain-containing protein7.2e-4664.1Show/hide
Query:  MREERPRCQEHQREAKEEAAAG----AKMISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGG
        MR++    +  Q+   EE AAG     +MI +AL RGSM MATIVF TCVWIPL QLK AI SM  +LSG TCQ LTT S P EVKL +CRF+ELQR  G
Subjt:  MREERPRCQEHQREAKEEAAAG----AKMISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGG

Query:  MEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLFPAL
         EEEICSVCL EFT + LVS+LHRCSH+FH+ECIE+WL R+ FTCPLCRSF+F  L
Subjt:  MEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLFPAL

A0A0D2SLB9 RING-type domain-containing protein4.4e-2745.74Show/hide
Query:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGG----MEEEICSVCLAEFTGDDLVSRLHR
        MISL       C A ++FYTCVWIP  Q K+ + S++G +   +C  +        V LP+ RF++L+   G     EEE+CS+CL EF  DD VS++ +
Subjt:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGG----MEEEICSVCLAEFTGDDLVSRLHR

Query:  CSHLFHVECIENWLHRDHFTCPLCRSFLF
        C H+FH+ CIE W+ R HFTCPLCRS LF
Subjt:  CSHLFHVECIENWLHRDHFTCPLCRSFLF

A0A5E4FLS0 PREDICTED: AP-1 complex subunit3.3e-2745.11Show/hide
Query:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPW--EVKLPICRFKELQRRGGME------EEICSVCLAEFTGDDLVS
        MI L + +  + MATI FYTC WIPL Q+K A+  ++G +  +TCQ    E      ++ LP+ RF++LQ  G +       EE CS+CL EF  +D+VS
Subjt:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPW--EVKLPICRFKELQRRGGME------EEICSVCLAEFTGDDLVS

Query:  RLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF
        +L +C H+FH++CIE W+ R HFTCP+CRS  F
Subjt:  RLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF

A0A6J5VPD4 RING-type domain-containing protein4.4e-2746.56Show/hide
Query:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRG----GME--EEICSVCLAEFTGDDLVSRL
        MI L + +  + MATI FYTC WIPL Q+K A+  ++G +  +TC+    E    ++ LP+ RF++LQ  G    G E  EE CS+CL EF  +D+VS+L
Subjt:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRG----GME--EEICSVCLAEFTGDDLVSRL

Query:  HRCSHLFHVECIENWLHRDHFTCPLCRSFLF
         +C H+FH++CIE W+ R HFTCP+CRS  F
Subjt:  HRCSHLFHVECIENWLHRDHFTCPLCRSFLF

A0A6P6AC29 RING-H2 finger protein ATL18-like3.3e-2746.38Show/hide
Query:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGW-----TCQPLTTESAPWEVKLPICRFKELQRRGGME--------EEICSVCLAEFTG
        MISL      +  A ++FYTCVWIP  QLK A+  ++G +  W     +CQ +        V LP+ RF++L+   G          EE+CS+CL EF  
Subjt:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGW-----TCQPLTTESAPWEVKLPICRFKELQRRGGME--------EEICSVCLAEFTG

Query:  DDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF
        +D+VS+LH+C HLFH+ CIE WL RD FTCPLCRSFLF
Subjt:  DDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF

SwissProt top hitse value%identityAlignment
Q8GW38 RING-H2 finger protein ATL479.4e-1147.76Show/hide
Query:  LPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF
        LP+  +KE+  +G  E   C+VCL EF+ DD +  L  CSH FH++CI+ WL   + TCPLCR  LF
Subjt:  LPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF

Q9LY41 E3 ubiquitin-protein ligase ATL41.0e-0941.86Show/hide
Query:  SGWTCQPLTTESAPWEVKLPICRFKELQRR-GGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF
        SG    P T  S+  +  LPI +F  + RR   M    C+VCL++F  +D +  L  C H FH +CI+ WL  +  TCPLCRS LF
Subjt:  SGWTCQPLTTESAPWEVKLPICRFKELQRR-GGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF

Q9SI09 Probable E3 ubiquitin-protein ligase XERICO2.1e-1039.74Show/hide
Query:  CQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRS
        CQP  +    +  + P  RF+ L R     +  CSVCL++F GD  +++L +C HLFH  C+E W+   + TCPLCR+
Subjt:  CQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRS

Q9SZL4 RING-H2 finger protein ATL184.7e-1841.94Show/hide
Query:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHL
        MIS+   R  +C A IVFYTCV IPL +LK          +G        +       L    F + ++    EE  C +CL EF  +D V+ L RC+HL
Subjt:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHL

Query:  FHVECIENWLHRDHFTCPLCRSFL
        FH+ CIE WL R H TCPLCRSF+
Subjt:  FHVECIENWLHRDHFTCPLCRSFL

Q9XF92 Brassinosteroid-responsive RING protein 11.1e-1142.65Show/hide
Query:  LPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLFP
        LP+ +F+EL   G    E C+VCL EF G+  +  L  C H+FH  C++ W+  D  TCPLCR+   P
Subjt:  LPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLFP

Arabidopsis top hitse value%identityAlignment
AT1G23980.1 RING/U-box superfamily protein6.7e-1247.76Show/hide
Query:  LPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF
        LP+  +KE+  +G  E   C+VCL EF+ DD +  L  CSH FH++CI+ WL   + TCPLCR  LF
Subjt:  LPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLF

AT2G04240.1 RING/U-box superfamily protein1.5e-1139.74Show/hide
Query:  CQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRS
        CQP  +    +  + P  RF+ L R     +  CSVCL++F GD  +++L +C HLFH  C+E W+   + TCPLCR+
Subjt:  CQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRS

AT3G61460.1 brassinosteroid-responsive RING-H27.9e-1342.65Show/hide
Query:  LPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLFP
        LP+ +F+EL   G    E C+VCL EF G+  +  L  C H+FH  C++ W+  D  TCPLCR+   P
Subjt:  LPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLFP

AT4G38140.1 RING/U-box superfamily protein3.3e-1941.94Show/hide
Query:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHL
        MIS+   R  +C A IVFYTCV IPL +LK          +G        +       L    F + ++    EE  C +CL EF  +D V+ L RC+HL
Subjt:  MISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIGLLSGWTCQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHL

Query:  FHVECIENWLHRDHFTCPLCRSFL
        FH+ CIE WL R H TCPLCRSF+
Subjt:  FHVECIENWLHRDHFTCPLCRSFL

AT5G41400.1 RING/U-box superfamily protein1.8e-1246.97Show/hide
Query:  LPICRFKELQRRG-GMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENW-LHRDHFTCPLCRS
        LP+ RF EL R G G   + C+VCL EF  DD + RL  C H+FH  C++ W +  +  TCPLCR+
Subjt:  LPICRFKELQRRG-GMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENW-LHRDHFTCPLCRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGACAGGAGCTCTCCTAGTGTTGATGCTTATATGTATGATCATGTAGGTGAAGATACCAATCATGTCACTGAGAAGAAACCGCAAGTGAGAAGAGTGAAGAATAT
GGATCAGATACACCACCTGGCTTTGGAGAGGAGAATGAGAGAGGAAAGGCCACGTTGCCAGGAGCATCAAAGAGAAGCAAAGGAAGAAGCTGCTGCTGGTGCTAAAATGA
TAAGCTTAGCGTTAGGTCGGGGTTCAATGTGCATGGCCACCATTGTCTTCTACACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGATGGCGATCGAAAGCATGATCGGC
CTTCTGTCGGGCTGGACGTGTCAGCCGCTCACGACGGAGTCGGCACCGTGGGAGGTAAAACTTCCAATTTGTAGGTTTAAAGAGCTGCAGCGTAGGGGAGGAATGGAGGA
GGAGATTTGCTCGGTTTGCTTGGCGGAGTTCACCGGAGACGATTTGGTGAGCCGACTGCACAGATGTAGCCATCTTTTCCATGTAGAATGTATTGAGAATTGGCTACATA
GAGATCATTTTACCTGTCCTCTCTGCAGATCCTTCCTCTTCCCAGCATTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCGACAGGAGCTCTCCTAGTGTTGATGCTTATATGTATGATCATGTAGGTGAAGATACCAATCATGTCACTGAGAAGAAACCGCAAGTGAGAAGAGTGAAGAATAT
GGATCAGATACACCACCTGGCTTTGGAGAGGAGAATGAGAGAGGAAAGGCCACGTTGCCAGGAGCATCAAAGAGAAGCAAAGGAAGAAGCTGCTGCTGGTGCTAAAATGA
TAAGCTTAGCGTTAGGTCGGGGTTCAATGTGCATGGCCACCATTGTCTTCTACACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGATGGCGATCGAAAGCATGATCGGC
CTTCTGTCGGGCTGGACGTGTCAGCCGCTCACGACGGAGTCGGCACCGTGGGAGGTAAAACTTCCAATTTGTAGGTTTAAAGAGCTGCAGCGTAGGGGAGGAATGGAGGA
GGAGATTTGCTCGGTTTGCTTGGCGGAGTTCACCGGAGACGATTTGGTGAGCCGACTGCACAGATGTAGCCATCTTTTCCATGTAGAATGTATTGAGAATTGGCTACATA
GAGATCATTTTACCTGTCCTCTCTGCAGATCCTTCCTCTTCCCAGCATTGTAA
Protein sequenceShow/hide protein sequence
MTDRSSPSVDAYMYDHVGEDTNHVTEKKPQVRRVKNMDQIHHLALERRMREERPRCQEHQREAKEEAAAGAKMISLALGRGSMCMATIVFYTCVWIPLCQLKMAIESMIG
LLSGWTCQPLTTESAPWEVKLPICRFKELQRRGGMEEEICSVCLAEFTGDDLVSRLHRCSHLFHVECIENWLHRDHFTCPLCRSFLFPAL