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CmoCh19G009110 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G009110
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionHomeobox-DDT domain protein RLT2
Genome locationCmo_Chr19:8541391..8542050
RNA-Seq ExpressionCmoCh19G009110
SyntenyCmoCh19G009110
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR018501 - DDT domain
IPR044977 - Homeobox-DDT domain protein RLT1/2/3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572264.1 Homeobox-DDT domain protein RLT2, partial [Cucurbita argyrosperma subsp. sororia]4.0e-2086.67Show/hide
Query:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        AWKFLVTF DVLGL  FTLDEFLQAFHDHDSRLLGEVH+AVLK +IKD+EDVARTSS GL
Subjt:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

XP_022952970.1 homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita moschata]4.0e-2086.67Show/hide
Query:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        AWKFLVTF DVLGL  FTLDEFLQAFHDHDSRLLGEVH+AVLK +IKD+EDVARTSS GL
Subjt:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

XP_022952971.1 homeobox-DDT domain protein RLT2-like isoform X2 [Cucurbita moschata]4.0e-2086.67Show/hide
Query:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        AWKFLVTF DVLGL  FTLDEFLQAFHDHDSRLLGEVH+AVLK +IKD+EDVARTSS GL
Subjt:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

XP_022952972.1 homeobox-DDT domain protein RLT2-like isoform X3 [Cucurbita moschata]4.0e-2086.67Show/hide
Query:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        AWKFLVTF DVLGL  FTLDEFLQAFHDHDSRLLGEVH+AVLK +IKD+EDVARTSS GL
Subjt:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

XP_022968923.1 LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like [Cucurbita maxima]3.0e-2088.33Show/hide
Query:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        AWKFLVTF DVLGL  FTLDEFLQAFHDHDSRLLGEVH+AVLK +IKDIEDVARTSS GL
Subjt:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

TrEMBL top hitse value%identityAlignment
A0A2P5B6M5 Octamer-binding transcription factor8.0e-1977.05Show/hide
Query:  KAWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        K W+FL+TF DVLGL  FTLDEF+QAFHD+D RLLGE+H+++LKSVIKDIEDVART STGL
Subjt:  KAWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

A0A6J1GLQ4 homeobox-DDT domain protein RLT2-like isoform X21.9e-2086.67Show/hide
Query:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        AWKFLVTF DVLGL  FTLDEFLQAFHDHDSRLLGEVH+AVLK +IKD+EDVARTSS GL
Subjt:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

A0A6J1GLW4 homeobox-DDT domain protein RLT2-like isoform X31.9e-2086.67Show/hide
Query:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        AWKFLVTF DVLGL  FTLDEFLQAFHDHDSRLLGEVH+AVLK +IKD+EDVARTSS GL
Subjt:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

A0A6J1GND4 homeobox-DDT domain protein RLT2-like isoform X11.9e-2086.67Show/hide
Query:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        AWKFLVTF DVLGL  FTLDEFLQAFHDHDSRLLGEVH+AVLK +IKD+EDVARTSS GL
Subjt:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

A0A6J1HZH7 LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like1.5e-2088.33Show/hide
Query:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        AWKFLVTF DVLGL  FTLDEFLQAFHDHDSRLLGEVH+AVLK +IKDIEDVARTSS GL
Subjt:  AWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

SwissProt top hitse value%identityAlignment
F4HY56 Homeobox-DDT domain protein RLT12.5e-1764.41Show/hide
Query:  WKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        W+FL++F DVL L  FTLDEF+QAFHD+DSRLLGE+H+ +L+S+I+D+EDVART  +G+
Subjt:  WKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

F4JRF5 Homeobox-DDT domain protein RLT31.8e-0743.08Show/hide
Query:  KAWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIE-DVARTSSTGLEVA
        K   FL T+   L +  FTLDEF +AFHD DS LLG++H+++LK ++ D+E ++ R S + L ++
Subjt:  KAWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIE-DVARTSSTGLEVA

Q9FFH1 Homeobox-DDT domain protein RLT28.6e-1867.8Show/hide
Query:  WKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        W+FL+TF DVLGL  FTLDEF QAFHD+D RL+GE+H+ +LK++IKDIE V RT STG+
Subjt:  WKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

Arabidopsis top hitse value%identityAlignment
AT1G28420.1 homeobox-11.8e-1864.41Show/hide
Query:  WKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        W+FL++F DVL L  FTLDEF+QAFHD+DSRLLGE+H+ +L+S+I+D+EDVART  +G+
Subjt:  WKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

AT4G12750.1 Homeodomain-like transcriptional regulator1.3e-0843.08Show/hide
Query:  KAWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIE-DVARTSSTGLEVA
        K   FL T+   L +  FTLDEF +AFHD DS LLG++H+++LK ++ D+E ++ R S + L ++
Subjt:  KAWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIE-DVARTSSTGLEVA

AT5G44180.1 Homeodomain-like transcriptional regulator6.1e-1967.8Show/hide
Query:  WKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        W+FL+TF DVLGL  FTLDEF QAFHD+D RL+GE+H+ +LK++IKDIE V RT STG+
Subjt:  WKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL

AT5G44180.2 Homeodomain-like transcriptional regulator6.1e-1967.8Show/hide
Query:  WKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL
        W+FL+TF DVLGL  FTLDEF QAFHD+D RL+GE+H+ +LK++IKDIE V RT STG+
Subjt:  WKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGAAACTTCTCCTGGTAAGGCGTGGAAGTTCTTGGTTACTTTCGTTGATGTTCTTGGCCTTCGGTCTTTTACTCTTGATGAGTTTCTTCAAGCTTTTCAT
GATCATGACTCAAGGTTATTGGGTGAAGTACACATGGCTGTTCTGAAATCTGTCATAAAGGATATTGAGGATGTTGCTAGAACCTCCTCTACAGGTCTGGAGGTG
GCCATCTGCGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCGAAACTTCTCCTGGTAAGGCGTGGAAGTTCTTGGTTACTTTCGTTGATGTTCTTGGCCTTCGGTCTTTTACTCTTGATGAGTTTCTTCAAGCTTTTCAT
GATCATGACTCAAGGTTATTGGGTGAAGTACACATGGCTGTTCTGAAATCTGTCATAAAGGATATTGAGGATGTTGCTAGAACCTCCTCTACAGGTCTGGAGGTG
GCCATCTGCGAATAG
Protein sequenceShow/hide protein sequence
MSETSPGKAWKFLVTFVDVLGLRSFTLDEFLQAFHDHDSRLLGEVHMAVLKSVIKDIEDVARTSSTGLEVAICE