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CmoCh19G009460 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G009460
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionThiF domain-containing protein
Genome locationCmo_Chr19:8667072..8671577
RNA-Seq ExpressionCmoCh19G009460
SyntenyCmoCh19G009460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022864.1 hypothetical protein SDJN02_16600, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-5289.76Show/hide
Query:  MNRRSR---RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKS
        MNRRSR   RS  SHSETFHKYLKPGALAQIRNSRMIARFNRVNL+SQIYSTRSSSLSP TAPI S LLQVNI DASPCFAGRVYGPLCLQRKKLLAAK 
Subjt:  MNRRSR---RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKS

Query:  SLWFLASSPTNLTPDSPPDPVIGVLGG
        SLWFL+SSPTNLTPDSPPDPVI VLGG
Subjt:  SLWFLASSPTNLTPDSPPDPVIGVLGG

XP_022952539.1 uncharacterized protein LOC111455201 [Cucurbita moschata]4.8e-61100Show/hide
Query:  MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW
        MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW
Subjt:  MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW

Query:  FLASSPTNLTPDSPPDPVIGVLGG
        FLASSPTNLTPDSPPDPVIGVLGG
Subjt:  FLASSPTNLTPDSPPDPVIGVLGG

XP_022969297.1 uncharacterized protein LOC111468346 [Cucurbita maxima]1.9e-5795.16Show/hide
Query:  MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW
        MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTR SSLS ST P+GSGLLQVN+ADASPCFAGRVYGPLCLQRKKLLAAKSSLW
Subjt:  MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW

Query:  FLASSPTNLTPDSPPDPVIGVLGG
        FLASS TNLTPDSPPDPVIGVLGG
Subjt:  FLASSPTNLTPDSPPDPVIGVLGG

XP_023530330.1 uncharacterized protein LOC111792933 [Cucurbita pepo subsp. pepo]2.4e-5290.55Show/hide
Query:  MNRRSR---RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKS
        MNRRSR   RS  SHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSP TAPI S LLQVNI DASPCFAGRVYGPLCLQRKKLLAAK 
Subjt:  MNRRSR---RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKS

Query:  SLWFLASSPTNLTPDSPPDPVIGVLGG
        SLWFL+SSPTNLTPDSPPDPVI VLGG
Subjt:  SLWFLASSPTNLTPDSPPDPVIGVLGG

XP_023554641.1 uncharacterized protein LOC111811831 [Cucurbita pepo subsp. pepo]2.6e-5996.77Show/hide
Query:  MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW
        MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPST P+GS +LQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW
Subjt:  MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW

Query:  FLASSPTNLTPDSPPDPVIGVLGG
        FLASSPTNLTPDSPPDPVIGVLGG
Subjt:  FLASSPTNLTPDSPPDPVIGVLGG

TrEMBL top hitse value%identityAlignment
A0A5D3C9X6 Uncharacterized protein1.7e-4888.71Show/hide
Query:  MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW
        MNRRSRRSGNS SETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYST SSSL     PI SGLLQVNI DASP FAGRVYGPL LQRKKLLA+K SLW
Subjt:  MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW

Query:  FLASSPTNLTPDSPPDPVIGVLGG
        FLASSPTNLTPDSPPDPVI VLGG
Subjt:  FLASSPTNLTPDSPPDPVIGVLGG

A0A6J1EXJ2 uncharacterized protein LOC1114370925.7e-5289.76Show/hide
Query:  MNRRSR---RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKS
        MNRRSR   RS  SHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTR SSLSP TAPI S LLQVNI DASPCFAGRVYGPLCLQRKKLLAAK 
Subjt:  MNRRSR---RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKS

Query:  SLWFLASSPTNLTPDSPPDPVIGVLGG
        SLWFL+SSPTNLTPDSPPDPVI VLGG
Subjt:  SLWFLASSPTNLTPDSPPDPVIGVLGG

A0A6J1GLZ8 uncharacterized protein LOC1114552012.3e-61100Show/hide
Query:  MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW
        MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW
Subjt:  MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW

Query:  FLASSPTNLTPDSPPDPVIGVLGG
        FLASSPTNLTPDSPPDPVIGVLGG
Subjt:  FLASSPTNLTPDSPPDPVIGVLGG

A0A6J1HVZ0 uncharacterized protein LOC1114683469.2e-5895.16Show/hide
Query:  MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW
        MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTR SSLS ST P+GSGLLQVN+ADASPCFAGRVYGPLCLQRKKLLAAKSSLW
Subjt:  MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLW

Query:  FLASSPTNLTPDSPPDPVIGVLGG
        FLASS TNLTPDSPPDPVIGVLGG
Subjt:  FLASSPTNLTPDSPPDPVIGVLGG

A0A6J1JMJ5 uncharacterized protein LOC1114865631.7e-5189.76Show/hide
Query:  MNRRSR---RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKS
        MNRRSR   RS  SHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSP TAPI S LLQVNI DASPCFAGRVYGPLCLQRKKLLAAK 
Subjt:  MNRRSR---RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKS

Query:  SLWFLASSPTNLTPDSPPDPVIGVLGG
        SLWFL+SS TNLTPDSPPDPVI VLGG
Subjt:  SLWFLASSPTNLTPDSPPDPVIGVLGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G26960.1 unknown protein6.6e-0834.95Show/hide
Query:  RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLWFLASSP
        RS    ++ FH+Y+KPGALAQIRN+R+    +   L   +        S S +PI +   Q    D  P    ++YGP  + RKKL  A+S++  L  SP
Subjt:  RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLWFLASSP

Query:  TNL
         ++
Subjt:  TNL

AT5G54970.1 unknown protein4.6e-0944Show/hide
Query:  RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIA---------DASPCFAGRVYGPLCLQRKKLLAAKS
        +S    S+ FH+YLKPGALAQIRNSR+ AR +  +LVS+      SSLS    PI      V+ A         D  P    ++YGP   QRKKL AA+S
Subjt:  RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIA---------DASPCFAGRVYGPLCLQRKKLLAAKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGGAGATCCAGAAGATCCGGGAACTCTCATTCCGAGACGTTTCACAAGTACCTAAAGCCTGGTGCGTTAGCACAAATCCGGAATTCGCGGATGATCGCCCGATT
CAATCGGGTTAATTTGGTATCTCAGATCTACTCCACTCGTTCCTCATCGCTATCGCCTTCTACTGCGCCGATTGGCTCCGGTCTGCTTCAGGTGAACATTGCTGATGCTT
CTCCTTGCTTTGCTGGGAGGGTGTATGGTCCCCTCTGCTTGCAGAGAAAAAAACTTTTGGCTGCTAAGTCTTCTTTGTGGTTCCTCGCTTCTAGCCCGACCAATCTCACA
CCCGATTCTCCGCCTGATCCGGTTATTGGAGTCTTAGGGGGTTTCATCCCTCAATATCATTTTGTGGCAGTAACTAATCAAGACGGTGTAAACATTCAGTCCGAAGTCGA
AGCCGAGCTCCAAATGGAAGAAACACGGCAAACGCGAACGGAGGTCAATGAATCAAATGGAACTTCAACTCAAGGGAGCGAAGGAGCGTTCGTAGTTCGTGTTATTTACG
AGATGACGATCACAAGCCTCAGTACGCATTTAAAACGTGTCTTGGCTGACAATTCTTATTCTGCGTTCAAACACTTGAAGCTCAATATGAATAAAGCTAGCGATGGAGTG
ATCAGTGCTCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCGGAGATCCAGAAGATCCGGGAACTCTCATTCCGAGACGTTTCACAAGTACCTAAAGCCTGGTGCGTTAGCACAAATCCGGAATTCGCGGATGATCGCCCGATT
CAATCGGGTTAATTTGGTATCTCAGATCTACTCCACTCGTTCCTCATCGCTATCGCCTTCTACTGCGCCGATTGGCTCCGGTCTGCTTCAGGTGAACATTGCTGATGCTT
CTCCTTGCTTTGCTGGGAGGGTGTATGGTCCCCTCTGCTTGCAGAGAAAAAAACTTTTGGCTGCTAAGTCTTCTTTGTGGTTCCTCGCTTCTAGCCCGACCAATCTCACA
CCCGATTCTCCGCCTGATCCGGTTATTGGAGTCTTAGGGGGTTTCATCCCTCAATATCATTTTGTGGCAGTAACTAATCAAGACGGTGTAAACATTCAGTCCGAAGTCGA
AGCCGAGCTCCAAATGGAAGAAACACGGCAAACGCGAACGGAGGTCAATGAATCAAATGGAACTTCAACTCAAGGGAGCGAAGGAGCGTTCGTAGTTCGTGTTATTTACG
AGATGACGATCACAAGCCTCAGTACGCATTTAAAACGTGTCTTGGCTGACAATTCTTATTCTGCGTTCAAACACTTGAAGCTCAATATGAATAAAGCTAGCGATGGAGTG
ATCAGTGCTCGATGA
Protein sequenceShow/hide protein sequence
MNRRSRRSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPSTAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLWFLASSPTNLT
PDSPPDPVIGVLGGFIPQYHFVAVTNQDGVNIQSEVEAELQMEETRQTRTEVNESNGTSTQGSEGAFVVRVIYEMTITSLSTHLKRVLADNSYSAFKHLKLNMNKASDGV
ISAR