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CmoCh19G009740 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G009740
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionATP-dependent helicase ATRX
Genome locationCmo_Chr19:8797089..8803340
RNA-Seq ExpressionCmoCh19G009740
SyntenyCmoCh19G009740
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572321.1 hypothetical protein SDJN03_29049, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2475Show/hide
Query:  MGSQVTGDLLASVSDAENPSQRPVRSIVKLVETEIFISHMHIMSALGVDDMVNFWRRAQVDICRRNSPLMRLRELEHKIWKLMGALLI
        MGSQVTGDLLASVSDAENPSQRPVR                     GVDDMVNFWRRAQVDICRRNSPLM LRELEHKIWKLMGALLI
Subjt:  MGSQVTGDLLASVSDAENPSQRPVRSIVKLVETEIFISHMHIMSALGVDDMVNFWRRAQVDICRRNSPLMRLRELEHKIWKLMGALLI
TrEMBL top hitse value%identityAlignment
A0A6J1HLN1 ATP-dependent helicase ATRX5.9e-0440Show/hide
Query:  MGSQVTGDLLASVSDAEN--PSQRPVRSI---VKLVETEIFISHMHIMSALGVDDMV-NFWRRAQVDICRRNSPLMRLRELEHKIW---KLMGALLINTP
        +GSQVTGDLLASVSDAE    +QRPVR      KL+E     +  ++       +M  N     +VD C  N            ++         L +TP
Subjt:  MGSQVTGDLLASVSDAEN--PSQRPVRSI---VKLVETEIFISHMHIMSALGVDDMV-NFWRRAQVDICRRNSPLMRLRELEHKIW---KLMGALLINTP

Query:  QLAAEMGLKFPGVVE
        Q AAEMGLKFPGV E
Subjt:  QLAAEMGLKFPGVVE
A0A6J1HNN1 ATP-dependent helicase ATRX5.9e-0440.71Show/hide
Query:  MGSQVTGDLLASVSDAEN--PSQRPV-RSIVKLVETEIFISHMHIMSALGVDDMV-NFWRRAQVDICRRNSPLMRLRELEHKIW---KLMGALLINTPQL
        +GSQVTGDLLASVSDAE    +QRPV R   KL+E     +  ++       +M  N     +VD C  N            ++         L +TPQ 
Subjt:  MGSQVTGDLLASVSDAEN--PSQRPV-RSIVKLVETEIFISHMHIMSALGVDDMV-NFWRRAQVDICRRNSPLMRLRELEHKIW---KLMGALLINTPQL

Query:  AAEMGLKFPGVVE
        AAEMGLKFPGV E
Subjt:  AAEMGLKFPGVVE
A0A6J1HQY8 ATP-dependent helicase ATRX5.9e-0440Show/hide
Query:  MGSQVTGDLLASVSDAEN--PSQRPVRSI---VKLVETEIFISHMHIMSALGVDDMV-NFWRRAQVDICRRNSPLMRLRELEHKIW---KLMGALLINTP
        +GSQVTGDLLASVSDAE    +QRPVR      KL+E     +  ++       +M  N     +VD C  N            ++         L +TP
Subjt:  MGSQVTGDLLASVSDAEN--PSQRPVRSI---VKLVETEIFISHMHIMSALGVDDMV-NFWRRAQVDICRRNSPLMRLRELEHKIW---KLMGALLINTP

Query:  QLAAEMGLKFPGVVE
        Q AAEMGLKFPGV E
Subjt:  QLAAEMGLKFPGVVE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCTCAAGTAACTGGCGATCTTCTTGCATCTGTATCTGACGCAGAGAACCCTTCACAAAGGCCTGTAAGGAGTATTGTGAAGCTTGTAGAAACTGAGATTTTCAT
TTCACATATGCATATAATGTCTGCTTTAGGTGTAGACGATATGGTAAACTTTTGGAGGAGGGCGCAAGTGGATATCTGTAGAAGAAATTCTCCACTCATGAGGCTGAGGG
AATTGGAACATAAAATTTGGAAGTTGATGGGTGCTCTCTTAATAAACACTCCGCAGCTAGCTGCTGAAATGGGACTCAAATTTCCTGGAGTTGTTGAGTCACGTTTTCCT
GTCACACTCATGTCTGGTGGCGTCGATCTGGCCACAAAATTGCAGCGATGGTTGACAAGGATCCGTAGCTCTGTAATGAGGATTCATACAAAATCAACTGATCTCCCCGG
CAGAGCCGGTAAGCTCCTGAACGAAGCGTCCACTGACTTTGAGAGTGCCATCATCATCATTAAGCACGGTAAATCTTACTAG
mRNA sequenceShow/hide mRNA sequence
TTAGCAGTTTCTGACAGTATTGAAGCTTTTCTGATATTTTAGTTGTCTTCTTATATATGTATATTATCTTTATATTCGTAATTTTCTTTATGAGTTGTGTGTATGATCTG
GAGTGTTGCTTATGCTCTGTGATATTTTTCTTCTGCGAGTTATGATTTGCTTTTGTCCAGAATGCTTTTGTTTAATTATCTCTCTGAATAGAAGCAACTTGATGGTGCTG
GTATCGAGCTATCGAGTCTCTTCAAGCAAATTGAGAGTCAGGCTTCTTATGGTTGCTATACTACTGAAGCTTGGAAAAAGAGGATACACTAGATGGGGTCTCAAGTAACT
GGCGATCTTCTTGCATCTGTATCTGACGCAGAGAACCCTTCACAAAGGCCTGTAAGGAGTATTGTGAAGCTTGTAGAAACTGAGATTTTCATTTCACATATGCATATAAT
GTCTGCTTTAGGTGTAGACGATATGGTAAACTTTTGGAGGAGGGCGCAAGTGGATATCTGTAGAAGAAATTCTCCACTCATGAGGCTGAGGGAATTGGAACATAAAATTT
GGAAGTTGATGGGTGCTCTCTTAATAAACACTCCGCAGCTAGCTGCTGAAATGGGACTCAAATTTCCTGGAGTTGTTGAGTCACGTTTTCCTGTCACACTCATGTCTGGT
GGCGTCGATCTGGCCACAAAATTGCAGCGATGGTTGACAAGGATCCGTAGCTCTGTAATGAGGATTCATACAAAATCAACTGATCTCCCCGGCAGAGCCGGTAAGCTCCT
GAACGAAGCGTCCACTGACTTTGAGAGTGCCATCATCATCATTAAGCACGGTAAATCTTACTAG
Protein sequenceShow/hide protein sequence
MGSQVTGDLLASVSDAENPSQRPVRSIVKLVETEIFISHMHIMSALGVDDMVNFWRRAQVDICRRNSPLMRLRELEHKIWKLMGALLINTPQLAAEMGLKFPGVVESRFP
VTLMSGGVDLATKLQRWLTRIRSSVMRIHTKSTDLPGRAGKLLNEASTDFESAIIIIKHGKSY