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CmoCh19G010710 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G010710
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSmall ubiquitin-related modifier
Genome locationCmo_Chr19:9260978..9261493
RNA-Seq ExpressionCmoCh19G010710
SyntenyCmoCh19G010710
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR022617 - Rad60/SUMO-like domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012013.1 Small ubiquitin-related modifier 1 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-3374.31Show/hide
Query:  MDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGGG
        MDEN+EAPIRKPEAEPG  NYVNVKVN Q  S             +   AYCKRQA+ELRTIAFLLDGHAIAGNQTADELGMEDG++IDAMKHHGGGGGG
Subjt:  MDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGGG

Query:  RVKWIFSFL
        RVKW+FS L
Subjt:  RVKWIFSFL

XP_022952738.1 small ubiquitin-related modifier 1-like [Cucurbita moschata]1.2e-57100Show/hide
Query:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGG
        MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGG
Subjt:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGG

Query:  GGGGRVKWIFSFL
        GGGGRVKWIFSFL
Subjt:  GGGGRVKWIFSFL

XP_022969392.1 small ubiquitin-related modifier 1-like isoform X1 [Cucurbita maxima]1.9e-3492.86Show/hide
Query:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADEL
        MSTTMDENQEAP RKPEA+PG  NYVNVKVNGQDGSEVYFRICKRTQLSKLMK YCKRQALELRTIAFLLDGHAIAGNQTADE+
Subjt:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADEL

XP_022969393.1 small ubiquitin-related modifier 1-like isoform X2 [Cucurbita maxima]3.3e-5091.23Show/hide
Query:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHH-G
        MSTTMDENQEAP RKPEA+PG  NYVNVKVNGQDGSEVYFRICKRTQLSKLMK YCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGD+IDAMKHH G
Subjt:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHH-G

Query:  GGGGGRVKWIFSFL
        GGGGGR+KW+FS L
Subjt:  GGGGGRVKWIFSFL

XP_023553983.1 small ubiquitin-related modifier 1-like [Cucurbita pepo subsp. pepo]6.6e-5191.15Show/hide
Query:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGG
        MSTTMDEN+EAP RKPEAEPG+  YVNVKVNGQDGSEVYFRICKRTQLS+LMKAYCKRQALEL TIAFLLDGHAI GNQTADELGMEDGD+IDAMKHHGG
Subjt:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGG

Query:  GGGGRVKWIFSFL
        GGGGRVKW+FSFL
Subjt:  GGGGRVKWIFSFL

TrEMBL top hitse value%identityAlignment
A0A5A7V249 Small ubiquitin-related modifier 15.3e-3067.29Show/hide
Query:  MSTTMDE-NQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHG
        MST+M+  + E   RK E +P    YVN+KVNGQDGSEVYFRI K+++LSKLM +YCKRQ LE  TIAFL+DGH IAG QTA+ELG+EDGD+IDAMKHH 
Subjt:  MSTTMDE-NQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHG

Query:  GGGGGRV
        GGGGG +
Subjt:  GGGGGRV

A0A6J1D1W9 small ubiquitin-related modifier 1-like5.0e-2866.32Show/hide
Query:  QEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGG
        +E   RKPE+EP +P YVN+KVNGQDGSEVYFR+ K+TQL KLM +YC+RQ  + R +AFLLDGH I GNQT ++L ++DGD+IDAM HHGGGGG
Subjt:  QEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGG

A0A6J1GLF8 Small ubiquitin-related modifier6.0e-58100Show/hide
Query:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGG
        MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGG
Subjt:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGG

Query:  GGGGRVKWIFSFL
        GGGGRVKWIFSFL
Subjt:  GGGGRVKWIFSFL

A0A6J1HW85 small ubiquitin-related modifier 1-like isoform X19.4e-3592.86Show/hide
Query:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADEL
        MSTTMDENQEAP RKPEA+PG  NYVNVKVNGQDGSEVYFRICKRTQLSKLMK YCKRQALELRTIAFLLDGHAIAGNQTADE+
Subjt:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADEL

A0A6J1I0U8 small ubiquitin-related modifier 1-like isoform X21.6e-5091.23Show/hide
Query:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHH-G
        MSTTMDENQEAP RKPEA+PG  NYVNVKVNGQDGSEVYFRICKRTQLSKLMK YCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGD+IDAMKHH G
Subjt:  MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHH-G

Query:  GGGGGRVKWIFSFL
        GGGGGR+KW+FS L
Subjt:  GGGGGRVKWIFSFL

SwissProt top hitse value%identityAlignment
O13351 Ubiquitin-like protein pmt3/smt36.1e-1546.46Show/hide
Query:  TTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGG
        TT D +Q+    KP  E     ++N+KV GQD +EV+F+I K T+ SKLMK YC RQ   + ++ FL+DG  I  +QT  EL MEDGD+I+A+    GG
Subjt:  TTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGG

P55852 Small ubiquitin-related modifier 11.5e-2153.47Show/hide
Query:  MDENQEAPIRKPEAEPGNPN-YVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGG
        M  NQE      + +PG+   ++N+KV GQDG+EV+FRI + TQL KLM AYC RQ++++ +IAFL DG  +   QT DEL MEDGD+IDAM H  GG G
Subjt:  MDENQEAPIRKPEAEPGNPN-YVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGG

Query:  G
        G
Subjt:  G

P55857 Small ubiquitin-related modifier 15.1e-2256.82Show/hide
Query:  RKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGG
        +KP    G   ++N+KV GQDG+EV+FRI + TQL KLM AYC RQ++++  IAFL DG  + G QT DEL MEDGD+IDAM H  GG
Subjt:  RKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGG

Q7ZTK7 Small ubiquitin-related modifier 2-A1.8e-1451.25Show/hide
Query:  NPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGG
        N +++N+KV GQDGS V F+I ++T LSKLMKAYC+RQ L +R I F  DG  I    T  +L MED D ID  +   GG
Subjt:  NPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGG

Q9FLP6 Small ubiquitin-related modifier 22.5e-2152.08Show/hide
Query:  EAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGGGRVKWIFSF
        + +P    ++N+KV GQDG+EV+FRI + TQL KLM AYC RQ+++  +IAFL DG  +   QT DEL MEDGD+IDAM H  GGG      +F F
Subjt:  EAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGGGRVKWIFSF

Arabidopsis top hitse value%identityAlignment
AT4G26840.1 small ubiquitin-like modifier 11.1e-2253.47Show/hide
Query:  MDENQEAPIRKPEAEPGNPN-YVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGG
        M  NQE      + +PG+   ++N+KV GQDG+EV+FRI + TQL KLM AYC RQ++++ +IAFL DG  +   QT DEL MEDGD+IDAM H  GG G
Subjt:  MDENQEAPIRKPEAEPGNPN-YVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGG

Query:  G
        G
Subjt:  G

AT5G55160.1 small ubiquitin-like modifier 21.8e-2252.08Show/hide
Query:  EAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGGGRVKWIFSF
        + +P    ++N+KV GQDG+EV+FRI + TQL KLM AYC RQ+++  +IAFL DG  +   QT DEL MEDGD+IDAM H  GGG      +F F
Subjt:  EAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGGGRVKWIFSF

AT5G55160.2 small ubiquitin-like modifier 21.1e-1945.87Show/hide
Query:  EAEPGNPNYVNVKVNGQ-------------DGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGG
        + +P    ++N+KV GQ             DG+EV+FRI + TQL KLM AYC RQ+++  +IAFL DG  +   QT DEL MEDGD+IDAM H  GGG 
Subjt:  EAEPGNPNYVNVKVNGQ-------------DGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGG

Query:  GRVKWIFSF
             +F F
Subjt:  GRVKWIFSF

AT5G55170.1 small ubiquitin-like modifier 32.0e-1349.35Show/hide
Query:  YVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGG
        +V +KV  QDG EV F+  K   L KLM  YC R+ L+L   AF+ +G  I G +T DEL MEDGD IDA +   GG
Subjt:  YVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGG

AT5G55856.1 Ubiquitin-like superfamily protein2.9e-1244.87Show/hide
Query:  NYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGG
        +++ VKV  QD   VYFRI +  +L K+M AY  +  +E+ T+ FL DG+ I  NQT +ELG+ED D+I+A     GG
Subjt:  NYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACAACGATGGATGAAAATCAGGAAGCACCGATCCGGAAACCCGAAGCAGAACCCGGAAACCCGAACTATGTCAACGTGAAGGTCAACGGGCAGGATGGGAGTGA
AGTGTATTTCAGGATTTGTAAGAGGACGCAACTCAGTAAACTCATGAAAGCGTACTGTAAACGACAAGCGTTGGAGCTGAGAACCATTGCGTTTCTGTTGGACGGCCATG
CCATTGCCGGAAACCAAACAGCCGATGAGCTGGGAATGGAGGATGGGGATAAAATTGATGCTATGAAACACCACGGCGGCGGCGGCGGCGGAAGAGTAAAGTGGATCTTT
TCATTTCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGACAACGATGGATGAAAATCAGGAAGCACCGATCCGGAAACCCGAAGCAGAACCCGGAAACCCGAACTATGTCAACGTGAAGGTCAACGGGCAGGATGGGAGTGA
AGTGTATTTCAGGATTTGTAAGAGGACGCAACTCAGTAAACTCATGAAAGCGTACTGTAAACGACAAGCGTTGGAGCTGAGAACCATTGCGTTTCTGTTGGACGGCCATG
CCATTGCCGGAAACCAAACAGCCGATGAGCTGGGAATGGAGGATGGGGATAAAATTGATGCTATGAAACACCACGGCGGCGGCGGCGGCGGAAGAGTAAAGTGGATCTTT
TCATTTCTCTGA
Protein sequenceShow/hide protein sequence
MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGGGRVKWIF
SFL