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CmoCh19G011060 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G011060
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCmo_Chr19:9436609..9436932
RNA-Seq ExpressionCmoCh19G011060
SyntenyCmoCh19G011060
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032472.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.1e-3483.16Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG
        MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNNL+L+A V TAIIDMY KCGSIG ALQVFEK+PNRG
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG

KAG6572452.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.9e-4894.39Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRGYLVGT
        MIGGYVRNGMFKEALKLFVKMQEE IQPSEF+MVSLLNASTQIGALSAR M+NEY+KK NLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRGYLVGT
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRGYLVGT

Query:  PRSLAWQ
        PRSLAWQ
Subjt:  PRSLAWQ

XP_008447140.1 PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucumis melo]4.1e-3483.16Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG
        MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNNL+L+A V TAIIDMY KCGSIG ALQVFEK+PNRG
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG

XP_022930672.1 pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita moschata]1.0e-3280.85Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MIGG+VRNGMFKEALKLFVKMQE+RI+PSE+TMVSLLNAS QIGAL      +EYIKKNN+EL++ V TAIIDMYSKCGSIGKALQVFEK+PNR
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR

XP_022989190.1 pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita maxima]3.5e-3381.91Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MIGG+VRNGMFKEALKLFVKMQE+RIQPSE+TMVSLLNAS QIGAL      +EYIKKNN+EL++ V TAIIDMYSKCGSIGKALQVFEK+PNR
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR

TrEMBL top hitse value%identityAlignment
A0A0A0K7F6 Uncharacterized protein1.4e-3281.91Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNNL+L+A V TAIIDMY KCGSIG ALQVFEK+P R
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR

A0A1S3BG64 pentatricopeptide repeat-containing protein At2g42920, chloroplastic2.0e-3483.16Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG
        MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNNL+L+A V TAIIDMY KCGSIG ALQVFEK+PNRG
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG

A0A5A7SN44 Pentatricopeptide repeat-containing protein2.0e-3483.16Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG
        MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNNL+L+A V TAIIDMY KCGSIG ALQVFEK+PNRG
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG

A0A6J1ER84 pentatricopeptide repeat-containing protein At2g42920, chloroplastic4.9e-3380.85Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MIGG+VRNGMFKEALKLFVKMQE+RI+PSE+TMVSLLNAS QIGAL      +EYIKKNN+EL++ V TAIIDMYSKCGSIGKALQVFEK+PNR
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR

A0A6J1JLQ0 pentatricopeptide repeat-containing protein At2g42920, chloroplastic1.7e-3381.91Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MIGG+VRNGMFKEALKLFVKMQE+RIQPSE+TMVSLLNAS QIGAL      +EYIKKNN+EL++ V TAIIDMYSKCGSIGKALQVFEK+PNR
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR

SwissProt top hitse value%identityAlignment
P93011 Pentatricopeptide repeat-containing protein At2g337602.6e-1540.66Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKM
        ++ G+ +NG+  EA+++F +M+E   +P   T VSLL+A  Q GA+S     ++YI    L+L+  + TA+I++YS+CG +GKA +VF+KM
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKM

Q38959 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic4.0e-1646.81Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MI  YV+N    EA +LF +MQ + ++P+EFT+V+LL ASTQ+G+LS     ++Y  KN   L   + TA+IDMYSKCGS+  A +VF+ M  +
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR

Q9LSB8 Putative pentatricopeptide repeat-containing protein At3g159303.7e-1444.68Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MI GY+R G F E+L++F +MQ   + P EFTMVS+L A   +G+L        YI KN ++    V  A+IDMY KCG   KA +VF  M  R
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR

Q9SJG6 Pentatricopeptide repeat-containing protein At2g42920, chloroplastic1.3e-1952.13Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MI G+VRNG FK+AL +F +MQE+ ++P  FTMVSLLNA   +GA       +EYI +N  EL++ V TA+IDMY KCG I + L VFE  P +
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR

Q9SUH6 Pentatricopeptide repeat-containing protein At4g307001.4e-1338.3Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MI GY +NG+ ++A+ LF +MQ+    P+  T+  +L+A  Q+GALS     ++ ++  + E S  V+TA+I MY+KCGSI +A ++F+ M  +
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR

Arabidopsis top hitse value%identityAlignment
AT2G33760.1 Pentatricopeptide repeat (PPR) superfamily protein1.8e-1640.66Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKM
        ++ G+ +NG+  EA+++F +M+E   +P   T VSLL+A  Q GA+S     ++YI    L+L+  + TA+I++YS+CG +GKA +VF+KM
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKM

AT2G42920.1 Pentatricopeptide repeat (PPR-like) superfamily protein9.4e-2152.13Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MI G+VRNG FK+AL +F +MQE+ ++P  FTMVSLLNA   +GA       +EYI +N  EL++ V TA+IDMY KCG I + L VFE  P +
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR

AT3G15930.1 Pentatricopeptide repeat (PPR) superfamily protein2.7e-1544.68Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MI GY+R G F E+L++F +MQ   + P EFTMVS+L A   +G+L        YI KN ++    V  A+IDMY KCG   KA +VF  M  R
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR

AT3G26630.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.8e-1746.81Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MI  YV+N    EA +LF +MQ + ++P+EFT+V+LL ASTQ+G+LS     ++Y  KN   L   + TA+IDMYSKCGS+  A +VF+ M  +
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR

AT4G30700.1 Pentatricopeptide repeat (PPR) superfamily protein1.0e-1438.3Show/hide
Query:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR
        MI GY +NG+ ++A+ LF +MQ+    P+  T+  +L+A  Q+GALS     ++ ++  + E S  V+TA+I MY+KCGSI +A ++F+ M  +
Subjt:  MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGTGGGTATGTTAGAAATGGGATGTTCAAAGAAGCTCTCAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGCTTGTT
AAATGCTTCAACTCAAATTGGAGCACTTTCGGCAAGGGGAATGGATAACGAGTACATAAAGAAGAACAATTTAGAGTTGAGTGCCAATGTAGCAACAGCGATCATAGACA
TGTACAGCAAATGTGGTAGCATAGGGAAGGCCCTTCAGGTGTTTGAGAAAATGCCCAACAGAGGATATTTAGTTGGAACTCCACGATCTTTGGCCTGGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGGTGGGTATGTTAGAAATGGGATGTTCAAAGAAGCTCTCAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGCTTGTT
AAATGCTTCAACTCAAATTGGAGCACTTTCGGCAAGGGGAATGGATAACGAGTACATAAAGAAGAACAATTTAGAGTTGAGTGCCAATGTAGCAACAGCGATCATAGACA
TGTACAGCAAATGTGGTAGCATAGGGAAGGCCCTTCAGGTGTTTGAGAAAATGCCCAACAGAGGATATTTAGTTGGAACTCCACGATCTTTGGCCTGGCAGTGA
Protein sequenceShow/hide protein sequence
MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRGYLVGTPRSLAWQ