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CmoCh19G011070 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G011070
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpentatricopeptide repeat-containing protein At2g22410, mitochondrial-like
Genome locationCmo_Chr19:9436979..9438087
RNA-Seq ExpressionCmoCh19G011070
SyntenyCmoCh19G011070
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572451.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]6.5e-7474.35Show/hide
Query:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVRRTYGNTEMVKWAAEKVNEWVMFLW-RMFMLDDEGLTEA
        MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTV RTYGNTEMVK AAEKVNEWVMFLW RMFMLDDEGLTEA
Subjt:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVRRTYGNTEMVKWAAEKVNEWVMFLW-RMFMLDDEGLTEA

Query:  QAEFTAASPLCRGKEFNGKFSGQIEPHRLYIYIFKGFTC---IQSFSSP------RLVAVPLALVRRCLLFSRSPLDSPSFLVSSYQTSTFSRPSPSPQN
        QAEFT                G I P  L   +    T     Q  SSP      RLVAVPLALVR  LLFSRSPLDSPSFL SSYQTSTFSRPSPSPQN
Subjt:  QAEFTAASPLCRGKEFNGKFSGQIEPHRLYIYIFKGFTC---IQSFSSP------RLVAVPLALVRRCLLFSRSPLDSPSFLVSSYQTSTFSRPSPSPQN

Query:  FLLFFLCSQPPSTASADTWGLVETLSSIFI
        FLLFFL   PPSTASAD        SS+FI
Subjt:  FLLFFLCSQPPSTASADTWGLVETLSSIFI

KAG6589301.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.4e-2068.29Show/hide
Query:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKVNE
        M +EG GFFSL  NTYR++AS KHYN+ VDM  RAGFLEEAEQL++TMPI+AD+II G  ++  RTYGNTEM K AAEKV E
Subjt:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKVNE

KAG7012049.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-7376.74Show/hide
Query:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVRRTYGNTEMVKWAAEKVNEWVMFLWRMFMLDDEGLTEAQ
        MENEGSGFFS TKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTV RTYGNTEMVK AAEKVNEWVMFLWRMFMLDDEGLTEAQ
Subjt:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVRRTYGNTEMVKWAAEKVNEWVMFLWRMFMLDDEGLTEAQ

Query:  AEFTAASPLCRGKEFNGKFSGQIEPHRLYIYIFKGFTC---IQSFSSP------RLVAVPLALVRRCLLFSRSPLDSPSFLVSSYQTSTFSRPSPSPQNF
        AEFT                G I P  L   +    T     Q  SSP      RLVAVPLALVR  LLFSRSPLDSPSFL SSYQTSTFSRPSPSPQNF
Subjt:  AEFTAASPLCRGKEFNGKFSGQIEPHRLYIYIFKGFTC---IQSFSSP------RLVAVPLALVRRCLLFSRSPLDSPSFLVSSYQTSTFSRPSPSPQNF

Query:  LLFFLCSQPPSTASA
        LLFFL   PPSTASA
Subjt:  LLFFLCSQPPSTASA

XP_022930672.1 pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita moschata]5.4e-2068.29Show/hide
Query:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKVNE
        M +EG GFFSL  NTYR++AS KHYN+ VDM  RAGFLEEAEQL++TMPI+AD+II G  ++  RTYGNTEM K AAEKV E
Subjt:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKVNE

XP_022952530.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucurbita moschata]1.6e-51100Show/hide
Query:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVRRTYGNTEMVKWAAEKVNEWVMFLWRMFMLDDEGLTEAQ
        MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVRRTYGNTEMVKWAAEKVNEWVMFLWRMFMLDDEGLTEAQ
Subjt:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVRRTYGNTEMVKWAAEKVNEWVMFLWRMFMLDDEGLTEAQ

Query:  AEFT
        AEFT
Subjt:  AEFT

TrEMBL top hitse value%identityAlignment
A0A0A0K7F6 Uncharacterized protein5.8e-2069.51Show/hide
Query:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKVNE
        M +EG  FFS  KNTYRI+ S KHYNL VDM SRAGFLEEAEQ +KTMPI+ DAII G  ++  R YGNTEM K AAEKVNE
Subjt:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKVNE

A0A1S3BG64 pentatricopeptide repeat-containing protein At2g42920, chloroplastic9.9e-2068.29Show/hide
Query:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKVNE
        M +EG  FFS  KNTYRI+ S KHYNL VDM SRAGFLEEAEQ +KTMP++ DAII G  ++  R YGNTEM K AAEKVNE
Subjt:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKVNE

A0A6J1ER84 pentatricopeptide repeat-containing protein At2g42920, chloroplastic2.6e-2068.29Show/hide
Query:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKVNE
        M +EG GFFSL  NTYR++AS KHYN+ VDM  RAGFLEEAEQL++TMPI+AD+II G  ++  RTYGNTEM K AAEKV E
Subjt:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKVNE

A0A6J1GM18 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like7.5e-52100Show/hide
Query:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVRRTYGNTEMVKWAAEKVNEWVMFLWRMFMLDDEGLTEAQ
        MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVRRTYGNTEMVKWAAEKVNEWVMFLWRMFMLDDEGLTEAQ
Subjt:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVRRTYGNTEMVKWAAEKVNEWVMFLWRMFMLDDEGLTEAQ

Query:  AEFT
        AEFT
Subjt:  AEFT

A0A6J1JLQ0 pentatricopeptide repeat-containing protein At2g42920, chloroplastic5.8e-2067.07Show/hide
Query:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKVNE
        M +EG GFFSL  NTYR++AS KHYN+ VDM  RAGFLEEAE+L++TMPI+AD+II G  ++  RTYGNTEM K AAEKV E
Subjt:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKVNE

SwissProt top hitse value%identityAlignment
P0C8Q8 Pentatricopeptide repeat-containing protein At5g19020, mitochondrial4.5e-0939.47Show/hide
Query:  GSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKV
        G  +F   K+ + I+   KHY   VD+  +AG LEEA++++K MP+KAD +I G  ++  RT+GN E+ + AA ++
Subjt:  GSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKV

Q9LZ19 Pentatricopeptide repeat-containing protein At5g04780, mitochondrial8.4e-0840.51Show/hide
Query:  EGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVR--RTYGNTEMVKWAAEKVNE
        EG  FF L + TY +  +  HY+  VD+  RAG L EA +L+K++P    A I G  +   R Y N E+ + AAEK+ E
Subjt:  EGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVR--RTYGNTEMVKWAAEKVNE

Q9SJG6 Pentatricopeptide repeat-containing protein At2g42920, chloroplastic7.6e-0946.48Show/hide
Query:  FFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAE
        FF L K  Y I+ S KHY L V++   AG LEEAE L+K MP++ D +I    ++  R  GN EM K AA+
Subjt:  FFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAE

Q9SJZ3 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial9.0e-1039.02Show/hide
Query:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTV--RRTYGNTEMVKWAAEKVNE
        M   G  +FS  K+ + ++   KHY++ VD+  RAG LEEA++L+++MP++ADA + G  +   R +GN E+ + AA+K+ E
Subjt:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTV--RRTYGNTEMVKWAAEKVNE

Q9SY02 Pentatricopeptide repeat-containing protein At4g027506.4e-0837.18Show/hide
Query:  NEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTV--RRTYGNTEMVKWAAEKV
        ++G  +F      Y +  +++HY   VD+  RAG LE+A  L+K MP + DA I G  +   R +GNTE+ + AA+K+
Subjt:  NEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTV--RRTYGNTEMVKWAAEKV

Arabidopsis top hitse value%identityAlignment
AT2G22410.1 SLOW GROWTH 16.4e-1139.02Show/hide
Query:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTV--RRTYGNTEMVKWAAEKVNE
        M   G  +FS  K+ + ++   KHY++ VD+  RAG LEEA++L+++MP++ADA + G  +   R +GN E+ + AA+K+ E
Subjt:  MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTV--RRTYGNTEMVKWAAEKVNE

AT2G42920.1 Pentatricopeptide repeat (PPR-like) superfamily protein5.4e-1046.48Show/hide
Query:  FFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAE
        FF L K  Y I+ S KHY L V++   AG LEEAE L+K MP++ D +I    ++  R  GN EM K AA+
Subjt:  FFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAE

AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.6e-0937.18Show/hide
Query:  NEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTV--RRTYGNTEMVKWAAEKV
        ++G  +F      Y +  +++HY   VD+  RAG LE+A  L+K MP + DA I G  +   R +GNTE+ + AA+K+
Subjt:  NEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTV--RRTYGNTEMVKWAAEKV

AT5G04780.1 Pentatricopeptide repeat (PPR) superfamily protein6.0e-0940.51Show/hide
Query:  EGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVR--RTYGNTEMVKWAAEKVNE
        EG  FF L + TY +  +  HY+  VD+  RAG L EA +L+K++P    A I G  +   R Y N E+ + AAEK+ E
Subjt:  EGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVR--RTYGNTEMVKWAAEKVNE

AT5G19020.1 mitochondrial editing factor 183.2e-1039.47Show/hide
Query:  GSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKV
        G  +F   K+ + I+   KHY   VD+  +AG LEEA++++K MP+KAD +I G  ++  RT+GN E+ + AA ++
Subjt:  GSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRG--VTVRRTYGNTEMVKWAAEKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAACGAAGGCAGCGGATTTTTCTCACTGACAAAAAACACATACAGAATTGATGCATCAACAAAACACTACAATTTAACGGTGGACATGTTCAGCCGAGCTGGGTT
TCTTGAAGAAGCAGAGCAGCTCCTAAAAACCATGCCAATTAAGGCAGATGCAATCATACGAGGGGTCACAGTTCGTAGAACATATGGGAACACAGAGATGGTGAAGTGGG
CAGCAGAAAAAGTTAATGAATGGGTTATGTTCTTATGGAGGATGTTCATGCTTGACGATGAAGGCCTGACGGAAGCGCAGGCAGAGTTTACCGCAGCCTCTCCTCTATGT
AGAGGGAAAGAATTCAATGGGAAATTTTCGGGTCAGATCGAACCGCACCGGTTATATATATATATATTTAAGGGTTTTACGTGCATTCAATCGTTCTCTTCTCCCCGCCT
GGTCGCCGTGCCACTCGCCCTCGTTCGTCGTTGCCTCCTCTTCTCCCGTTCTCCCCTTGACTCGCCGTCGTTCCTCGTCTCTTCATATCAGACTTCAACCTTCAGCCGAC
CGTCGCCATCGCCTCAAAACTTTTTACTCTTCTTCCTCTGCAGTCAGCCACCGTCCACTGCCAGCGCCGATACTTGGGGTTTGGTCGAAACTTTGTCCAGCATTTTTATT
TATTGTGTTCACTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAACGAAGGCAGCGGATTTTTCTCACTGACAAAAAACACATACAGAATTGATGCATCAACAAAACACTACAATTTAACGGTGGACATGTTCAGCCGAGCTGGGTT
TCTTGAAGAAGCAGAGCAGCTCCTAAAAACCATGCCAATTAAGGCAGATGCAATCATACGAGGGGTCACAGTTCGTAGAACATATGGGAACACAGAGATGGTGAAGTGGG
CAGCAGAAAAAGTTAATGAATGGGTTATGTTCTTATGGAGGATGTTCATGCTTGACGATGAAGGCCTGACGGAAGCGCAGGCAGAGTTTACCGCAGCCTCTCCTCTATGT
AGAGGGAAAGAATTCAATGGGAAATTTTCGGGTCAGATCGAACCGCACCGGTTATATATATATATATTTAAGGGTTTTACGTGCATTCAATCGTTCTCTTCTCCCCGCCT
GGTCGCCGTGCCACTCGCCCTCGTTCGTCGTTGCCTCCTCTTCTCCCGTTCTCCCCTTGACTCGCCGTCGTTCCTCGTCTCTTCATATCAGACTTCAACCTTCAGCCGAC
CGTCGCCATCGCCTCAAAACTTTTTACTCTTCTTCCTCTGCAGTCAGCCACCGTCCACTGCCAGCGCCGATACTTGGGGTTTGGTCGAAACTTTGTCCAGCATTTTTATT
TATTGTGTTCACTGTTAG
Protein sequenceShow/hide protein sequence
MENEGSGFFSLTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVRRTYGNTEMVKWAAEKVNEWVMFLWRMFMLDDEGLTEAQAEFTAASPLC
RGKEFNGKFSGQIEPHRLYIYIFKGFTCIQSFSSPRLVAVPLALVRRCLLFSRSPLDSPSFLVSSYQTSTFSRPSPSPQNFLLFFLCSQPPSTASADTWGLVETLSSIFI
YCVHC