CuGenDBv2

Gene ID	CmoCh20G000090
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	importin-5-like
Genome location	Cmo_Chr20:111157..113526
RNA-Seq Expression	CmoCh20G000090
Synteny	CmoCh20G000090
Gene Ontology terms	GO:0006606 - protein import into nucleus (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0008139 - nuclear localization sequence binding (molecular function) GO:0061608 - nuclear import signal receptor activity (molecular function)
InterPro domains	IPR011989 - Armadillo-like helical IPR040122 - Importin beta family

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6570315.1 Ethylene-responsive transcription factor ERN1, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-20

98.11

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Query:  ERSDMELLGPSNQHLPKIVAVFAEGRRVDSKLKLQTTHGMACGCVGAGSSNST
        +RSDMELLGPSNQHLPKIVAVFAEGRRVDSKLKLQTTHGMACGCVGAGSSNST
Subjt:  ERSDMELLGPSNQHLPKIVAVFAEGRRVDSKLKLQTTHGMACGCVGAGSSNST

XP_022153746.1 importin-5-like isoform X1 [Momordica charantia]

2.6e-16

87.04

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Query:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE
        QVVP WLNCLPIKGD VE KIV DQL SLVERSDMELLGP+NQ+LPKIVAVFAE
Subjt:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE

XP_022153747.1 importin-5-like isoform X2 [Momordica charantia]

2.6e-16

87.04

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Query:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE
        QVVP WLNCLPIKGD VE KIV DQL SLVERSDMELLGP+NQ+LPKIVAVFAE
Subjt:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE

XP_022995377.1 importin-5-like [Cucurbita maxima]

5.9e-16

85.19

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Query:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE
        QVVP WLNCLPIKGD VE KIV DQL SLVERSDME+LGP+NQ+LPKIVAVFAE
Subjt:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE

XP_038900350.1 importin-5 isoform X1 [Benincasa hispida]

7.7e-16

85.19

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Query:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE
        QVVP WLNCLPIKGD VE KIV DQL SLVERSD+ELLGP+NQ+LPKIVAVFAE
Subjt:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0C1 Uncharacterized protein

4.8e-16

69.57

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Query:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGRRVDSKLKLQTTHG
        QVVP WLNCLPIKGD VE KIV DQL SLVERSD+ELLGP+NQ+LPKI AVFAE       L  + T G
Subjt:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGRRVDSKLKLQTTHG

A0A1S3BNQ2 importin-5

4.8e-16

69.57

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Query:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGRRVDSKLKLQTTHG
        QVVP WLNCLPIKGD VE KIV DQL SLVERSD+ELLGP+NQ+LPKI AVFAE       L  + T G
Subjt:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGRRVDSKLKLQTTHG

A0A6J1DJS8 importin-5-like isoform X2

1.3e-16

87.04

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Query:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE
        QVVP WLNCLPIKGD VE KIV DQL SLVERSDMELLGP+NQ+LPKIVAVFAE
Subjt:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE

A0A6J1DLM2 importin-5-like isoform X1

1.3e-16

87.04

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Query:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE
        QVVP WLNCLPIKGD VE KIV DQL SLVERSDMELLGP+NQ+LPKIVAVFAE
Subjt:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE

A0A6J1JYP9 importin-5-like

2.8e-16

85.19

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Query:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE
        QVVP WLNCLPIKGD VE KIV DQL SLVERSDME+LGP+NQ+LPKIVAVFAE
Subjt:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE

SwissProt top hits

e value

%identity

Alignment

O60518 Ran-binding protein 6

3.7e-05

39.29

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Query:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGR
        +V+P WL+ LP+  D  E    L  L  L+E +   ++GP+N +LPKI+++ AEG+
Subjt:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGR

Q8BIV3 Ran-binding protein 6

2.8e-05

39.29

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Query:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGR
        +V+P WL+ LP+  D  E    L+ L  L+E +   ++GP+N +LPKI+++ AEG+
Subjt:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGR

Arabidopsis top hits

e value

%identity

Alignment

AT5G19820.1 ARM repeat superfamily protein

2.2e-16

68.52

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Query:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE
        QV+P WLNCLPI  D +E K+V DQL S+VER D++LLGP+NQHLPKI+ VFAE
Subjt:  QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE

Sequences

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CDS sequence

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ATGCCCCAAGTTGTTCCACCATGGTTAAACTGCCTACCAATAAAAGGTGACTGGGTTGAACCAAAAATTGTGCTCGACCAACTTCGTTCTTTGGTGGAGAGGTCGGATAT
GGAACTCTTGGGTCCAAGTAATCAACATCTTCCCAAAATAGTTGCAGTTTTTGCCGAGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGT
GCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACACGAAAAGGGCACTACATTTATAAGCCCAATAATTAA

mRNA sequence

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Protein sequence

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MPQVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGRRVDSKLKLQTTHGMACGCVGAGSSNSTRKGHYIYKPNN

CmoCh20G000090 (gene) of Cucurbita moschata (Rifu) v1 genome