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CmoCh20G000650 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G000650
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLipoxygenase
Genome locationCmo_Chr20:358025..364533
RNA-Seq ExpressionCmoCh20G000650
SyntenyCmoCh20G000650
Gene Ontology termsGO:0006633 - fatty acid biosynthetic process (biological process)
GO:0031408 - oxylipin biosynthetic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR036226 - Lipoxigenase, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570373.1 hypothetical protein SDJN03_29288, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3598.61Show/hide
Query:  MKTYLVVLKVGHSFAKDGLILWDAVLEWMTNYECHCYADERAMKNDPYWKVQHGEGGLYDASSLPFKISQGE
        MKTYLVVLKVGHSFAKDGLILWDAVLEWMTNYECHCYADERAMKNDPYWKVQHGEGGLYDASSLPFKISQG+
Subjt:  MKTYLVVLKVGHSFAKDGLILWDAVLEWMTNYECHCYADERAMKNDPYWKVQHGEGGLYDASSLPFKISQGE
KAG7010251.1 Linoleate 13S-lipoxygenase 2-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-0558.14Show/hide
Query:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND----PYWK
        + FA DGL+LWDA+LEWMT Y  H Y DE+A+KND     +WK
Subjt:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND----PYWK
XP_022943469.1 linoleate 13S-lipoxygenase 2-1, chloroplastic-like isoform X1 [Cucurbita moschata]4.9e-0558.14Show/hide
Query:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND----PYWK
        + FA DGL+LWDA+LEWMT Y  H Y DE+A+KND     +WK
Subjt:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND----PYWK
XP_022985897.1 linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita maxima]2.2e-0560.47Show/hide
Query:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND----PYWK
        + FA DGL+LWDAVLEWMT Y  H Y DE+A+KND     +WK
Subjt:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND----PYWK
XP_023513406.1 linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita pepo subsp. pepo]4.9e-0558.14Show/hide
Query:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND----PYWK
        + FA DGL+LWDA+LEWMT Y  H Y DE+A+KND     +WK
Subjt:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND----PYWK
TrEMBL top hitse value%identityAlignment
A0A5A7TDJ5 Lipoxygenase2.6e-0460Show/hide
Query:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND
        + FA DGLILW+A++EWMT Y  H Y D++A+KND
Subjt:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND
A0A5A7TEK5 Lipoxygenase2.6e-0460Show/hide
Query:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND
        + FA DGLILW+A++EWMT Y  H Y D++A+KND
Subjt:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND
A0A5D3DE91 Lipoxygenase2.6e-0460Show/hide
Query:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND
        + FA DGLILW+A++EWMT Y  H Y D++A+KND
Subjt:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND
A0A6J1FUE7 Lipoxygenase2.4e-0558.14Show/hide
Query:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND----PYWK
        + FA DGL+LWDA+LEWMT Y  H Y DE+A+KND     +WK
Subjt:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND----PYWK
A0A6J1J654 Lipoxygenase1.1e-0560.47Show/hide
Query:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND----PYWK
        + FA DGL+LWDAVLEWMT Y  H Y DE+A+KND     +WK
Subjt:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND----PYWK
SwissProt top hitse value%identityAlignment
P38418 Lipoxygenase 2, chloroplastic3.9e-0554.29Show/hide
Query:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND
        + FA DGLILWDA+ EW+T+Y  H Y DE  + +D
Subjt:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND
Arabidopsis top hitse value%identityAlignment
AT3G45140.1 lipoxygenase 22.8e-0654.29Show/hide
Query:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND
        + FA DGLILWDA+ EW+T+Y  H Y DE  + +D
Subjt:  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGACGTACCTCGTGGTCTTAAAAGTTGGGCACTCTTTTGCGAAGGATGGTCTCATCTTATGGGACGCCGTGTTGGAATGGATGACCAATTACGAGTGCCAC
TGTTACGCGGATGAGAGAGCGATGAAGAACGACCCGTATTGGAAGGTCCAGCATGGCGAGGGAGGACTATACGATGCTTCAAGCCTTCCCTTCAAGATCTCACAG
GGGGAGAAGATGGCACCACAAATATTAAATAGGGCCTTCAAAGCGTTTAAACAGAAAGTGGAGCATTTACACAAAACCAACTTCAAACTATGGGATTACAGGACA
GGGAGTTCCATACAGCGTTTCCAAATTTTAGGATGTGGTACAAAAAAATATCTTACAAATAATGTTGATTTGTTAAAGCATGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGACGTACCTCGTGGTCTTAAAAGTTGGGCACTCTTTTGCGAAGGATGGTCTCATCTTATGGGACGCCGTGTTGGAATGGATGACCAATTACGAGTGCCAC
TGTTACGCGGATGAGAGAGCGATGAAGAACGACCCGTATTGGAAGGTCCAGCATGGCGAGGGAGGACTATACGATGCTTCAAGCCTTCCCTTCAAGATCTCACAG
GGGGAGAAGATGGCACCACAAATATTAAATAGGGCCTTCAAAGCGTTTAAACAGAAAGTGGAGCATTTACACAAAACCAACTTCAAACTATGGGATTACAGGACA
GGGAGTTCCATACAGCGTTTCCAAATTTTAGGATGTGGTACAAAAAAATATCTTACAAATAATGTTGATTTGTTAAAGCATGCGTAA
Protein sequenceShow/hide protein sequence
MKTYLVVLKVGHSFAKDGLILWDAVLEWMTNYECHCYADERAMKNDPYWKVQHGEGGLYDASSLPFKISQGEKMAPQILNRAFKAFKQKVEHLHKTNFKLWDYRT
GSSIQRFQILGCGTKKYLTNNVDLLKHA