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CmoCh20G000950 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G000950
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationCmo_Chr20:476466..476798
RNA-Seq ExpressionCmoCh20G000950
SyntenyCmoCh20G000950
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570402.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.4e-4498.21Show/hide
Query:  MASMSITASFLPFTATQPS--AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
        MASMSITASFLPFTATQPS  AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
Subjt:  MASMSITASFLPFTATQPS--AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI

Query:  CVTMPTARICRK
        CVTMPTARICRK
Subjt:  CVTMPTARICRK

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]5.7e-3178.18Show/hide
Query:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV
        MASM++TASFLP TAT+  +A  RRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICV
Subjt:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]1.1e-45100Show/hide
Query:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV
        MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV
Subjt:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

XP_023512156.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita pepo subsp. pepo]1.7e-4397.32Show/hide
Query:  MASMSITASFLPFTATQPS--AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
        MASMSITASFLPFTATQPS  AAAARRALFV KASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
Subjt:  MASMSITASFLPFTATQPS--AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI

Query:  CVTMPTARICRK
        CVTMPTARICRK
Subjt:  CVTMPTARICRK

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]1.5e-3180Show/hide
Query:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV
        MASM++TASFLP TA +  + AARRAL V KASTS+ A    SN NLEIKNVKVE+ QGRRELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICV
Subjt:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein1.8e-3077.27Show/hide
Query:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV
        MASM++TASFLP TAT+  ++ ARR L V KASTS  A    SN N+E+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICV
Subjt:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic2.7e-3178.18Show/hide
Query:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV
        MASM++TASFLP TAT+  +A  RRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICV
Subjt:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A5A7TID9 Photosystem II 5 kDa protein2.7e-3178.18Show/hide
Query:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV
        MASM++TASFLP TAT+  +A  RRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICV
Subjt:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A6J1FY72 photosystem II 5 kDa protein, chloroplastic5.2e-46100Show/hide
Query:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV
        MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV
Subjt:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic5.2e-46100Show/hide
Query:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV
        MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV
Subjt:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic1.1e-0841.96Show/hide
Query:  MASMSITASFLPFTATQPS--AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMAD-EPPRGSAEAKQKYAP
        MAS+++ +SFL  +   P+   +A RR + + KA             N+ I   +   + GRREL  A    AA + AK AMAD EP RG+ EAK+KY+ 
Subjt:  MASMSITASFLPFTATQPS--AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMAD-EPPRGSAEAKQKYAP

Query:  ICVTMPTARICR
        +CVT PTARICR
Subjt:  ICVTMPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic1.3e-0945.45Show/hide
Query:  MASMSITASFLPFT-ATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPIC
        MAS+++T SFL  T  T+ S    +R L V  A+  A       +        K E + GRRE++ AA   A  + A  A A EP RGSAEAK+ YAP+C
Subjt:  MASMSITASFLPFT-ATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPIC

Query:  VTMPTARICR
        VTMPTARICR
Subjt:  VTMPTARICR

Q39195 Photosystem II 5 kDa protein, chloroplastic3.6e-1247.75Show/hide
Query:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMA--DEPPRGSAEAKQKYAPI
        MASM++TA+F P  A  PSA   RR L V +AST      S++  +LE+K  +  S+  RR+L+  A   A  + AK AMA  +EP RG+  AK+KYA +
Subjt:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMA--DEPPRGSAEAKQKYAPI

Query:  CVTMPTARICR
        CVTMPTA+ICR
Subjt:  CVTMPTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein6.7e-1448.67Show/hide
Query:  MASMSITASFLPFTATQPS--AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESS-QGRRELVAAAVTVAAATFAKAAMA-DEPPRGSAEAKQKYA
        MASM++T+SFLP  +  P+  ++ +RR+L V KAS S   T         ++N K E S + RR+LV  A   A  + AK AMA DEP RG+  AK+KYA
Subjt:  MASMSITASFLPFTATQPS--AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESS-QGRRELVAAAVTVAAATFAKAAMA-DEPPRGSAEAKQKYA

Query:  PICVTMPTARICR
        P+CVTMPTA+ICR
Subjt:  PICVTMPTARICR

AT3G21055.1 photosystem II subunit T2.6e-1347.75Show/hide
Query:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMA--DEPPRGSAEAKQKYAPI
        MASM++TA+F P  A  PSA   RR L V +AST      S++  +LE+K  +  S+  RR+L+  A   A  + AK AMA  +EP RG+  AK+KYA +
Subjt:  MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMA--DEPPRGSAEAKQKYAPI

Query:  CVTMPTARICR
        CVTMPTA+ICR
Subjt:  CVTMPTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCATGTCTATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCACCAAGGCCTCCACCTCTGCCGC
TGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGA
CCTTCGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCTGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGCCGCAAA
TGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCATGTCTATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCACCAAGGCCTCCACCTCTGCCGC
TGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGA
CCTTCGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCTGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGCCGCAAA
TGA
Protein sequenceShow/hide protein sequence
MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK