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CmoCh20G001100 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G001100
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionZinc finger, FYVE-type
Genome locationCmo_Chr20:565062..566104
RNA-Seq ExpressionCmoCh20G001100
SyntenyCmoCh20G001100
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR013591 - Brevis radix (BRX) domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605934.1 PH, RCC1 and FYVE domains-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]6.5e-1697.78Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
        F RKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH

KAG7010291.1 Ultraviolet-B receptor UVR8 [Cucurbita argyrosperma subsp. argyrosperma]6.5e-1697.78Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
        F RKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH

XP_022943861.1 PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata]6.5e-1697.78Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
        F RKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH

XP_023513312.1 PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo]6.5e-1697.78Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
        F RKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH

XP_023521703.1 PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo]6.5e-1697.78Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
        F RKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH

TrEMBL top hitse value%identityAlignment
A0A5A7V3C5 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 11.6e-1595.56Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
        F RKRFTEKQAEQWWAENRARVYDQYNVR IDKSSVGVGSEDLAH
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH

A0A5D3BB50 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 11.6e-1595.56Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
        F RKRFTEKQAEQWWAENRARVYDQYNVR IDKSSVGVGSEDLAH
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH

A0A6J1DFK1 uncharacterized protein LOC1110206191.2e-1593.33Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
        F RKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVG+GSEDL H
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH

A0A6J1FSV2 PH, RCC1 and FYVE domains-containing protein 1-like3.1e-1697.78Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
        F RKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH

A0A6J1K2X2 PH, RCC1 and FYVE domains-containing protein 1-like3.1e-1697.78Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
        F RKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH

SwissProt top hitse value%identityAlignment
Q947D2 PH, RCC1 and FYVE domains-containing protein 13.7e-0652.38Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSED
        F R+RF E QAE WW+ENR +VY++YNVR+ +KS+      D
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSED

Arabidopsis top hitse value%identityAlignment
AT1G76950.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain2.6e-0752.38Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSED
        F R+RF E QAE WW+ENR +VY++YNVR+ +KS+      D
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSED

AT5G12350.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain8.7e-1177.14Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSS
        F RKRF+E QAEQWWA+NR RVY+QYNVRM+DK+S
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSS

AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain9.0e-1680.43Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVR-MIDKSSVGVGSEDLAH
        F RKRF+EKQAE+WWAENR RVY+QYNVR ++DKSSVGVGSEDL H
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVR-MIDKSSVGVGSEDLAH

AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain9.0e-1680.43Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVR-MIDKSSVGVGSEDLAH
        F RKRF+EKQAE+WWAENR RVY+QYNVR ++DKSSVGVGSEDL H
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVR-MIDKSSVGVGSEDLAH

AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain2.4e-0863.89Show/hide
Query:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSV
        F R+RF E+QAE WW+ENR RVY++YN+R  D+SSV
Subjt:  FVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTAAAGAGGAAAAGTCAACGAAATTCATTGGCTATCGCTGAAGTTTGCGAGACAAGAACAGTAAGGATCAAACATTTATTCTTGTTGTTTAATGTTGAATTTTG
TGAAGTATGCTGTGTGGAGATGATGAATCATGTGGTAGCTCATCTGTCTAATCTCACAGTACTAATAGCATCATTTGTTCGGAAACGATTTACCGAGAAGCAAGCCGAAC
AGTGGTGGGCGGAGAATCGAGCAAGAGTATATGATCAATATAACGTGCGTATGATCGATAAGTCCAGTGTGGGCGTCGGGAGCGAGGACTTGGCTCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTAAAGAGGAAAAGTCAACGAAATTCATTGGCTATCGCTGAAGTTTGCGAGACAAGAACAGTAAGGATCAAACATTTATTCTTGTTGTTTAATGTTGAATTTTG
TGAAGTATGCTGTGTGGAGATGATGAATCATGTGGTAGCTCATCTGTCTAATCTCACAGTACTAATAGCATCATTTGTTCGGAAACGATTTACCGAGAAGCAAGCCGAAC
AGTGGTGGGCGGAGAATCGAGCAAGAGTATATGATCAATATAACGTGCGTATGATCGATAAGTCCAGTGTGGGCGTCGGGAGCGAGGACTTGGCTCACTGACGTGGAAAA
GGGTCAGTCTAATCCAATTTGATTGTAAATGAACAGGATGTTTACAGTCTCACAGCTTATATTACTGGTAAGTGATGATATGATCATTTTGTATGGTTTTATCCACCCCT
TGGGATAGAAAAGAAACGGCCATATATAGTATTGAGTTAGAGGGATAACTAAGAGGGGTTTGTGTTTTAAATTGTTCCCCTGTTTTTCACCTTCATTTTCTTGTTTGTTT
CTTTTCCCTTTTCTCTCTTTTTGGGGGGTCCCTCAATTTTCCCCCTATATATGTGTTTATCTGGGGCATTGAGTGTGAGAAATGTAAATTTTTAGTAACTCTGCTGGCTG
TACTTCACATCAGCTGTGCAATGTAAATCCGATAAAGTCAATGCGTTTGCATATTTTTGTACTTATAACCCTTCCAAGCTTAGTTTATGATTCCATTTTTTTCTTCTACC
TAAGGAACAAATGTAACTGTATGCTGTCGGTTTTAACTACTTTTGCTCTCCTTGATTTGGTGCATTTGGCGTTACCGATGCGCGAGTCCCTCGAACATGTCGCTCGTGTA
TCAAGAAATAAAATTTGACGACTTACCTTCATTTT
Protein sequenceShow/hide protein sequence
MALKRKSQRNSLAIAEVCETRTVRIKHLFLLFNVEFCEVCCVEMMNHVVAHLSNLTVLIASFVRKRFTEKQAEQWWAENRARVYDQYNVRMIDKSSVGVGSEDLAH