CuGenDBv2

Gene ID	CmoCh20G001190
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	RING-type domain-containing protein
Genome location	Cmo_Chr20:603255..605676
RNA-Seq Expression	CmoCh20G001190
Synteny	CmoCh20G001190
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6570419.1 hypothetical protein SDJN03_29334, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-24

60.18

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Query:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL
        MTSSGISLKSAELSDAVQDLKVCDQ                                             VEMWKKLEIQGTGHGSHDGACAICLNKISL
Subjt:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL

Query:  PETALVRGCEHAY
        PETALVRGCEHAY
Subjt:  PETALVRGCEHAY

XP_022943783.1 uncharacterized protein LOC111448431 [Cucurbita moschata]

1.5e-24

60.18

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Query:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL
        MTSSGISLKSAELSDAVQDLKVCDQ                                             VEMWKKLEIQGTGHGSHDGACAICLNKISL
Subjt:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL

Query:  PETALVRGCEHAY
        PETALVRGCEHAY
Subjt:  PETALVRGCEHAY

XP_022987030.1 uncharacterized protein LOC111484597 [Cucurbita maxima]

1.7e-20

55.75

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Query:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL
        MTSSGISLKSAELSDAVQDLKVCDQ+                                             EMWKKLE+Q TGHGSH G+CAICLNKISL
Subjt:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL

Query:  PETALVRGCEHAY
        PETALVRGCEHAY
Subjt:  PETALVRGCEHAY

XP_023511780.1 uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo]

1.5e-24

60.18

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Query:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL
        MTSSGISLKSAELSDAVQDLKVCDQ                                             VEMWKKLEIQGTGHGSHDGACAICLNKISL
Subjt:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL

Query:  PETALVRGCEHAY
        PETALVRGCEHAY
Subjt:  PETALVRGCEHAY

XP_038901112.1 uncharacterized protein LOC120088112 isoform X1 [Benincasa hispida]

1.1e-19

53.98

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Query:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL
        M+SSGIS++SAELSDAVQ+L +CDQ            +HI R V        +    I        + + +EM KK+EIQ TGHGSHDGACAICLNKI+L
Subjt:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL

Query:  PETALVRGCEHAY
         ETALVRGCEHAY
Subjt:  PETALVRGCEHAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KK15 RING-type domain-containing protein

2.0e-19

55.75

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Query:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL
        M+SSGIS +S+EL+DAVQ L +CDQ     K    M T  G           I    I     E    D +EM KK+EIQGTGHGSHDGACAICLNKI+L
Subjt:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL

Query:  PETALVRGCEHAY
         ETALVRGCEHAY
Subjt:  PETALVRGCEHAY

A0A6J1DGD3 uncharacterized protein LOC111020607

9.9e-19

49.15

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Query:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL
        MTSSGIS++ AE+SDAVQ+L++CDQ    VK+G                                         KK+EIQGTGHGSHDGACAICLNKI+L
Subjt:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL

Query:  PETALVRGCEHAYWLVLI
         ETALVRGCEHAY +  I
Subjt:  PETALVRGCEHAYWLVLI

A0A6J1FXD4 uncharacterized protein LOC111448431

7.1e-25

60.18

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Query:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL
        MTSSGISLKSAELSDAVQDLKVCDQ                                             VEMWKKLEIQGTGHGSHDGACAICLNKISL
Subjt:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL

Query:  PETALVRGCEHAY
        PETALVRGCEHAY
Subjt:  PETALVRGCEHAY

A0A6J1H396 uncharacterized protein LOC111459609

1.9e-17

49.56

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Query:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL
        M SSGIS +SAELSDAVQ L+VC+Q                                             +EM KK+EIQGTGHGSHDG CAICLNKI+L
Subjt:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL

Query:  PETALVRGCEHAY
         ETALVRGCEHAY
Subjt:  PETALVRGCEHAY

A0A6J1JFP2 uncharacterized protein LOC111484597

8.1e-21

55.75

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Query:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL
        MTSSGISLKSAELSDAVQDLKVCDQ+                                             EMWKKLE+Q TGHGSH G+CAICLNKISL
Subjt:  MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISL

Query:  PETALVRGCEHAY
        PETALVRGCEHAY
Subjt:  PETALVRGCEHAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G12310.1 RING/U-box superfamily protein

3.9e-07

61.76

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Query:  GSHDGACAICLNKISLPETALVRGCEHAYWLVLI
        G+H G CAICL+ I L ETA+V+GCEHAY +  I
Subjt:  GSHDGACAICLNKISLPETALVRGCEHAYWLVLI

AT5G19430.1 RING/U-box superfamily protein

1.0e-07

53.66

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Query:  EIQGTGHGSHDGACAICLNKISLPETALVRGCEHAYWLVLI
        EI     G+H G CAICL++I L ETA+V+GCEH Y +  I
Subjt:  EIQGTGHGSHDGACAICLNKISLPETALVRGCEHAYWLVLI

AT5G19430.2 RING/U-box superfamily protein

1.0e-07

53.66

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Query:  EIQGTGHGSHDGACAICLNKISLPETALVRGCEHAYWLVLI
        EI     G+H G CAICL++I L ETA+V+GCEH Y +  I
Subjt:  EIQGTGHGSHDGACAICLNKISLPETALVRGCEHAYWLVLI

Sequences

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CDS sequence

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ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGATCAGAAAATCAGCTGCGTAAAACTTGGCGTGGGAATGAT
TACGCACATCGGGAGGCTTGTTTTCTGCGTTTATCATCTAGGAAGAATATGGTTAAAACGAATTGAATTCATGTTTTCAGAGTTGCATATCTATGATTTTGTGGAAATGT
GGAAGAAGTTAGAAATCCAAGGGACGGGGCATGGGAGCCATGATGGCGCCTGTGCAATTTGTTTAAATAAAATATCCCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAA
CACGCCTATTGGTTAGTTCTAATTGATTAA

mRNA sequence

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TCTCGAGTAGATAATATTTTCGAGCATCTGTTATTTTCTCTTCTGGTTCGGAATAATTATCAGCATCGCCTTTCTTTTCAAAGTTTTGATTTGTGCTGAAGAACTGTTCG
CGTCCTGTGTAATCTAAAGCGAGAAAGATCGGAGGAGAAACCCTCGCGTACTCGCTATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAA
GACCTGAAAGTTTGCGATCAGAAAATCAGCTGCGTAAAACTTGGCGTGGGAATGATTACGCACATCGGGAGGCTTGTTTTCTGCGTTTATCATCTAGGAAGAATATGGTT
AAAACGAATTGAATTCATGTTTTCAGAGTTGCATATCTATGATTTTGTGGAAATGTGGAAGAAGTTAGAAATCCAAGGGACGGGGCATGGGAGCCATGATGGCGCCTGTG
CAATTTGTTTAAATAAAATATCCCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGGTTAGTTCTAATTGATTAATCGTTTGTCTACTAATTAATGTTT
TTTATGGAATGACTTTCACCTGCTTCAATACATTAGGTAATTGTTGATCTGTTTCTTTCCAGTATTTGTATGGGAATCCTTTTTGCAGTCAAATGTTGAAGTTCTATAGA
TGGTGTAATTCTAATGCCTGCTTTTATCATTTATATTTCATTTTGTTGCGACTATATGCTTGTAATGGAGATGGAGTGTAAAGTTCTTGCGAACATATATTCCTGGGACT
CTGCTAAACTTTGTGGGAGAAAATTCAATGTATCCATATTGTCTTTTGTGCAATGTTTCTAATATTACTCGAGGTTGTTCGGATTTAATTGAAGAGGTATGCTGTTCTAG
GCTTATAACCAAAGCATCTTGGAGTTAGGAAATTGTATGGTACTGAGCCTAATGGTTAATCTATAGTTTGATGTTCTTTGAAAGTTATGTCAGAAACTAGCAGAAGTCAT
TGTATAGAAGTTAAAATGCTTGCTTGTTTGGACTTGGATAGAAGTTTGTTGTTCTTTGAAGCATTAGAAATTTTGTCCTTGTGTTGTTTGTGGAATGAAGGTGACCTTTT
ATAGCTGTGCATATGGGCGTTGTCTTATTTTGTTTCATCTTTCTTTAACTTTCATGAAGTACGACTTGCATCCTTCGATGGGCTTCATACACTCAAAAACCCACCTGTCC
GCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGATCTCTTGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGT
ATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTACGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCG
CCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATC
ACGGGAGCCTACGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAAC
ATTTAGCTAGGTTTGGCCTGAATTAACTTAATGTCGAGCTCCTGTATAGAAATAAGCCCTGCGCTTGACCGTGTGTACAGTTTCTAAGGTTCATTTTAGTTTGCTGGGCG
ATGTGCCTTACCAGATGCTGGGAGCTCCAAAGAAATCTAAGATGGAGATCATAAATACCTACGAGGTGTACCATTGAATTCTTTATATTATAAACATTGGCTCTCAAAAG
TAATCATAAAAGTATTAAGACTTTATCA

Protein sequence

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MTSSGISLKSAELSDAVQDLKVCDQKISCVKLGVGMITHIGRLVFCVYHLGRIWLKRIEFMFSELHIYDFVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALVRGCE
HAYWLVLID

CmoCh20G001190 (gene) of Cucurbita moschata (Rifu) v1 genome