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CmoCh20G001260 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G001260
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiondendritic arbor reduction protein 1 isoform X2
Genome locationCmo_Chr20:631848..633800
RNA-Seq ExpressionCmoCh20G001260
SyntenyCmoCh20G001260
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570425.1 hypothetical protein SDJN03_29340, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4899.03Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPV GA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA

Query:  VVG
        VVG
Subjt:  VVG

XP_022943522.1 dendritic arbor reduction protein 1 isoform X1 [Cucurbita moschata]2.3e-49100Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA

Query:  VVG
        VVG
Subjt:  VVG

XP_022943523.1 dendritic arbor reduction protein 1 isoform X2 [Cucurbita moschata]2.3e-49100Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA

Query:  VVG
        VVG
Subjt:  VVG

XP_023512837.1 dendritic arbor reduction protein 1 isoform X1 [Cucurbita pepo subsp. pepo]5.7e-4898.06Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHR QHHHQRHHPHHGQLPV GA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA

Query:  VVG
        VVG
Subjt:  VVG

XP_023512838.1 dendritic arbor reduction protein 1 isoform X2 [Cucurbita pepo subsp. pepo]5.7e-4898.06Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHR QHHHQRHHPHHGQLPV GA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA

Query:  VVG
        VVG
Subjt:  VVG

TrEMBL top hitse value%identityAlignment
A0A6J1DJD7 lateral signaling target protein 2 homolog1.0e-2671.58Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRH-HQHRHRHEHRQQHHHQRHHPHHGQ
        MD+R EN W+SVPEFGGWD+N P ASNYSVVF++ARAN+KQQKTDLTEFKR+SLGNE+ELMA A    +H HQHRHRHEH+ QH    HH HH Q
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRH-HQHRHRHEHRQQHHHQRHHPHHGQ

A0A6J1FT95 dendritic arbor reduction protein 1 isoform X11.1e-49100Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA

Query:  VVG
        VVG
Subjt:  VVG

A0A6J1FX29 dendritic arbor reduction protein 1 isoform X21.1e-49100Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA

Query:  VVG
        VVG
Subjt:  VVG

A0A6J1JCC4 dendritic arbor reduction protein 1 isoform X29.8e-4694.17Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQH HR EHR QHHH RHHPHHGQLP  GA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA

Query:  VVG
        VVG
Subjt:  VVG

A0A6J1JEB9 dendritic arbor reduction protein 1 isoform X19.8e-4694.17Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQH HR EHR QHHH RHHPHHGQLP  GA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGA

Query:  VVG
        VVG
Subjt:  VVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein9.1e-1253.75Show/hide
Query:  MDSRTEN-RWKSVPEFGGWDNNTP-DASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHE
        MD R EN  W  VP+FGGWD   P DA+NYSVVFS+ARAN+KQ K  +   + +SLG+E+ELM    ++  H Q  HRHE
Subjt:  MDSRTEN-RWKSVPEFGGWDNNTP-DASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTCGTACGGAGAATAGGTGGAAATCCGTTCCAGAATTTGGGGGGTGGGATAATAATACGCCTGATGCAAGCAATTATTCCGTTGTATTTTCTCGAGCTCGTGC
TAATAAGAAACAGCAAAAGACCGATTTAACTGAGTTCAAAAGAGCCAGCCTAGGGAATGAAAAGGAGTTAATGGCCATCGCGGATAAACATGATCGCCACCACCAGCATC
GCCACCGTCACGAACACCGACAGCAGCATCACCACCAACGCCACCACCCGCATCATGGTCAATTACCAGTGGGTGGCGCTGTTGTCGGGGCTAGTCTATGTCTATGCAAC
ACGAACACGGACACGAACTCAACACACACACACAACACGGGCACTAACATGAACTTGAACTCAACACACATAACACGGGCACGAACACGAACTCAACACACATGTAACAT
GGATTCAAACATGACACGGCGACAGGAAGTTGATGGCTGGTCGTCTTGGGTCTTGGCGAACAGTGAAGAATCCCCGGAGGGTGGCTGCAATCATGGGGCGCGGACCATAA
ATGGGCTTCAATTAAATGGGTCGCCGCCAGTCCTCCTCCTTCATCTTCGGCGATCCTCCAGCAACAGACCCACGCTACTCTCCGGCGCCCACAGTGAACAGCGCAACTCC
GACCAGCAATCGCCGCCTTACCTACACGATCGACGACAGTTTGCTCCTCTTCACCCTCGCAGACGGCGACCCACTGCGCACGACGGCGCAACATTCTCCAGCACCGGCAG
CACGAGCTGCTCCACATTTGGAATTCTTCTGAGGACTAATCGAACTTAG
mRNA sequenceShow/hide mRNA sequence
CTGCAGTCTCCCACCCCATCCTCCCCTCTTCAGGCCGTATGGATTCTCGTACGGAGAATAGGTGGAAATCCGTTCCAGAATTTGGGGGGTGGGATAATAATACGCCTGAT
GCAAGCAATTATTCCGTTGTATTTTCTCGAGCTCGTGCTAATAAGAAACAGCAAAAGACCGATTTAACTGAGTTCAAAAGAGCCAGCCTAGGGAATGAAAAGGAGTTAAT
GGCCATCGCGGATAAACATGATCGCCACCACCAGCATCGCCACCGTCACGAACACCGACAGCAGCATCACCACCAACGCCACCACCCGCATCATGGTCAATTACCAGTGG
GTGGCGCTGTTGTCGGGGCTAGTCTATGTCTATGCAACACGAACACGGACACGAACTCAACACACACACACAACACGGGCACTAACATGAACTTGAACTCAACACACATA
ACACGGGCACGAACACGAACTCAACACACATGTAACATGGATTCAAACATGACACGGCGACAGGAAGTTGATGGCTGGTCGTCTTGGGTCTTGGCGAACAGTGAAGAATC
CCCGGAGGGTGGCTGCAATCATGGGGCGCGGACCATAAATGGGCTTCAATTAAATGGGTCGCCGCCAGTCCTCCTCCTTCATCTTCGGCGATCCTCCAGCAACAGACCCA
CGCTACTCTCCGGCGCCCACAGTGAACAGCGCAACTCCGACCAGCAATCGCCGCCTTACCTACACGATCGACGACAGTTTGCTCCTCTTCACCCTCGCAGACGGCGACCC
ACTGCGCACGACGGCGCAACATTCTCCAGCACCGGCAGCACGAGCTGCTCCACATTTGGAATTCTTCTGAGGACTAATCGAACTTAG
Protein sequenceShow/hide protein sequence
MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGAVVGASLCLCN
TNTDTNSTHTHNTGTNMNLNSTHITRARTRTQHTCNMDSNMTRRQEVDGWSSWVLANSEESPEGGCNHGARTINGLQLNGSPPVLLLHLRRSSSNRPTLLSGAHSEQRNS
DQQSPPYLHDRRQFAPLHPRRRRPTAHDGATFSSTGSTSCSTFGILLRTNRT