; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh20G001330 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G001330
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
Genome locationCmo_Chr20:661013..667911
RNA-Seq ExpressionCmoCh20G001330
SyntenyCmoCh20G001330
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
InterPro domainsIPR027973 - Protein of unknown function DUF4602


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570433.1 Proteasome adapter and scaffold protein ECM29, partial [Cucurbita argyrosperma subsp. sororia]4.0e-14297.83Show/hide
Query:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
        MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGK QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
Subjt:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS

Query:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKDPIATMDESEFRRLLQLFPVVRSRDYHAESELSRQSTSKSSKSELSE
        SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKDPIATMDESEFRRLLQLFPVVRSRDYHAESELSRQSTSKSSKSE   
Subjt:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKDPIATMDESEFRRLLQLFPVVRSRDYHAESELSRQSTSKSSKSELSE

Query:  WQEAWNEDGEKSKDQGSDLHDAFWKKLKFAAEQKVGKLEAERFCNSFQQIHNKLVNEELSSDAARSFLESFSCSSTE
          EAWNEDGEKSKDQGSDLHDAFWKKLKFAAEQKVGKLEAERFCNSFQQIHNKLVNEELSSDAARSFLESFSCSSTE
Subjt:  WQEAWNEDGEKSKDQGSDLHDAFWKKLKFAAEQKVGKLEAERFCNSFQQIHNKLVNEELSSDAARSFLESFSCSSTE

KAG7010308.1 hypothetical protein SDJN02_27101 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-7699.35Show/hide
Query:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
        MHSRDKSAKAGSSRNS DMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
Subjt:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS

Query:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK
        SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK
Subjt:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK

XP_022944773.1 uncharacterized protein LOC111449125 [Cucurbita moschata]2.7e-77100Show/hide
Query:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
        MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
Subjt:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS

Query:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK
        SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK
Subjt:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK

XP_022985670.1 uncharacterized protein LOC111483659 [Cucurbita maxima]9.4e-7597.39Show/hide
Query:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
        MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPI+KKQKEREQKMVQEHWNVSQFGG AS
Subjt:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS

Query:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK
        SNHSRNSLGKRKPE QVLKSSEGFFKHGVLDVKHLLRPAPSRNSD GNEMAGK
Subjt:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK

XP_023511857.1 uncharacterized protein LOC111776750 [Cucurbita pepo subsp. pepo]1.5e-7598.04Show/hide
Query:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
        MHSRDKSAKAGSSRNSTD+EPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGG AS
Subjt:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS

Query:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK
        SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDV HLLRPAPSRNSDFGNEMAGK
Subjt:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK

TrEMBL top hitse value%identityAlignment
A0A0A0KEY3 Uncharacterized protein9.9e-6281.1Show/hide
Query:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
        MHSRDK AKAGSSR+STDME  M MRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEH +V QFGG AS
Subjt:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS

Query:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPA------------PSRNSDFGNEMAG
        S++SR S GKR+PE QVLKSSEGFFKHGVLDVKHLLRP+            P RN+DFGNEM G
Subjt:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPA------------PSRNSDFGNEMAG

A0A1S3BNE0 uncharacterized protein LOC1034914572.6e-6281.21Show/hide
Query:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
        MHSRDK AKAGSSR+STDME  M MRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEH +V QFGG AS
Subjt:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS

Query:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPA------------PSRNSDFGNEMAGK
        S++SR S GKR+PE QVLKSSEGFFKHGVLDVKHLLRP+            P RN+DFGNEM GK
Subjt:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPA------------PSRNSDFGNEMAGK

A0A6J1FZ06 uncharacterized protein LOC1114491251.3e-77100Show/hide
Query:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
        MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
Subjt:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS

Query:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK
        SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK
Subjt:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK

A0A6J1FZ15 uncharacterized protein LOC111449126 isoform X11.6e-56100Show/hide
Query:  MDESEFRRLLQLFPVVRSRDYHAESELSRQSTSKSSKSELSEWQEAWNEDGEKSKDQGSDLHDAFWKKLKFAAEQKVGKLEAERFCNSFQQIHNKLVNEE
        MDESEFRRLLQLFPVVRSRDYHAESELSRQSTSKSSKSELSEWQEAWNEDGEKSKDQGSDLHDAFWKKLKFAAEQKVGKLEAERFCNSFQQIHNKLVNEE
Subjt:  MDESEFRRLLQLFPVVRSRDYHAESELSRQSTSKSSKSELSEWQEAWNEDGEKSKDQGSDLHDAFWKKLKFAAEQKVGKLEAERFCNSFQQIHNKLVNEE

Query:  LSSDAARSFLESFSCSSTE
        LSSDAARSFLESFSCSSTE
Subjt:  LSSDAARSFLESFSCSSTE

A0A6J1JBZ2 uncharacterized protein LOC1114836594.6e-7597.39Show/hide
Query:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
        MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPI+KKQKEREQKMVQEHWNVSQFGG AS
Subjt:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS

Query:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK
        SNHSRNSLGKRKPE QVLKSSEGFFKHGVLDVKHLLRPAPSRNSD GNEMAGK
Subjt:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G44820.1 unknown protein8.4e-2948.97Show/hide
Query:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
        ++ R    K      ST ++  ++ +NI K++    SSHM+WKDKK +E +K+ +LGGK QK  RLPLSVAR  MKKQK+RE+KM++++  + +FGG  S
Subjt:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS

Query:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSD
        S+  + +  KR PE +VLKS+ G FK GVLDVKHLLR  PS +SD
Subjt:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSD

AT2G44820.2 unknown protein8.4e-2948.97Show/hide
Query:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS
        ++ R    K      ST ++  ++ +NI K++    SSHM+WKDKK +E +K+ +LGGK QK  RLPLSVAR  MKKQK+RE+KM++++  + +FGG  S
Subjt:  MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTAS

Query:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSD
        S+  + +  KR PE +VLKS+ G FK GVLDVKHLLR  PS +SD
Subjt:  SNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSD

AT5G12240.1 unknown protein4.0e-1538.18Show/hide
Query:  MDESEFRRLLQLFPVVRSRDYHAESELSRQSTSKS-SKSELSEWQEAWNEDGEK-----SKDQG------------------------------SDLHDA
        MD+ EFR LL LFPVVRSRD+ AE + S+QSTS+S    E+SEW +A      K       DQG                              S L  A
Subjt:  MDESEFRRLLQLFPVVRSRDYHAESELSRQSTSKS-SKSELSEWQEAWNEDGEK-----SKDQG------------------------------SDLHDA

Query:  -------------------FWKKLKFAAEQKVGKLEAERFCNSFQQIHNKLVNEELSSDAARSFL
                           FW+ LK AAE+KVG +EAERFC +F+++H KLV EEL  +AA+ +L
Subjt:  -------------------FWKKLKFAAEQKVGKLEAERFCNSFQQIHNKLVNEELSSDAARSFL

AT5G12240.2 unknown protein2.9e-2152.25Show/hide
Query:  MDESEFRRLLQLFPVVRSRDYHAESELSRQSTSKS-SKSELSEWQEAWNEDGEKSKDQGSDLHDAFWKKLKFAAEQKVGKLEAERFCNSFQQIHNKLVNE
        MD+ EFR LL LFPVVRSRD+ AE + S+QSTS+S    E+SEW +A      K         D FW+ LK AAE+KVG +EAERFC +F+++H KLV E
Subjt:  MDESEFRRLLQLFPVVRSRDYHAESELSRQSTSKS-SKSELSEWQEAWNEDGEKSKDQGSDLHDAFWKKLKFAAEQKVGKLEAERFCNSFQQIHNKLVNE

Query:  ELSSDAARSFL
        EL  +AA+ +L
Subjt:  ELSSDAARSFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTCCAGAGATAAAAGTGCAAAAGCGGGATCATCTAGGAACTCGACGGATATGGAACCTGTAATGAACATGCGAAATATCAAGAAAGAAATTGAATTCCTCACCTC
CTCTCATATGTCATGGAAAGACAAAAAGGAGATTGAGAGTAGGAAAATTGTTTCTTTGGGTGGAAAGCCTCAAAAGAAACAAAGATTGCCTCTAAGTGTAGCACGACCAA
TCATGAAGAAGCAGAAGGAAAGAGAACAAAAGATGGTACAAGAGCATTGGAATGTTAGTCAATTTGGCGGGACGGCTAGTAGTAACCACTCTAGAAACTCGTTGGGGAAG
CGCAAACCCGAAAACCAGGTTCTTAAGTCGAGTGAAGGCTTTTTCAAACACGGTGTGCTTGATGTCAAGCATCTACTACGCCCAGCTCCTTCTAGGAATAGTGACTTCGG
AAACGAAATGGCCGGCAAAGATCCAATTGCAACTATGGACGAGTCCGAATTTCGTCGACTTCTTCAACTCTTTCCCGTTGTTCGATCTCGGGATTATCATGCGGAGTCGG
AGTTATCTAGACAGTCAACATCCAAGTCATCCAAGAGTGAGTTGAGTGAATGGCAGGAAGCATGGAATGAAGATGGAGAAAAATCAAAGGATCAAGGATCTGACCTACAT
GATGCATTCTGGAAGAAGCTAAAGTTCGCTGCTGAGCAGAAGGTGGGCAAGCTTGAAGCAGAGAGATTCTGTAACTCATTTCAACAGATTCACAATAAACTTGTTAACGA
AGAACTGAGTTCAGATGCTGCCCGGAGCTTTCTGGAGTCGTTCAGTTGCAGTTCCACAGAATAG
mRNA sequenceShow/hide mRNA sequence
CTTTCCTTCCCCACTTACCCGCCTTCTCCTCCTTCCAGCAGCCGTCCGATCCCCACTCTCCACTACGCGCCCCCAGCGCCACTGTTCTTTCTCCTCTTCTTATTTTCACT
CTCTGCTGCAACCTTACGCCGCCACGCCAACCCCATCTTCTGCTGCAGCCCCCCATCAATCGTGATAAGATGCATTCCAGAGATAAAAGTGCAAAAGCGGGATCATCTAG
GAACTCGACGGATATGGAACCTGTAATGAACATGCGAAATATCAAGAAAGAAATTGAATTCCTCACCTCCTCTCATATGTCATGGAAAGACAAAAAGGAGATTGAGAGTA
GGAAAATTGTTTCTTTGGGTGGAAAGCCTCAAAAGAAACAAAGATTGCCTCTAAGTGTAGCACGACCAATCATGAAGAAGCAGAAGGAAAGAGAACAAAAGATGGTACAA
GAGCATTGGAATGTTAGTCAATTTGGCGGGACGGCTAGTAGTAACCACTCTAGAAACTCGTTGGGGAAGCGCAAACCCGAAAACCAGGTTCTTAAGTCGAGTGAAGGCTT
TTTCAAACACGGTGTGCTTGATGTCAAGCATCTACTACGCCCAGCTCCTTCTAGGAATAGTGACTTCGGAAACGAAATGGCCGGCAAAGATCCAATTGCAACTATGGACG
AGTCCGAATTTCGTCGACTTCTTCAACTCTTTCCCGTTGTTCGATCTCGGGATTATCATGCGGAGTCGGAGTTATCTAGACAGTCAACATCCAAGTCATCCAAGAGTGAG
TTGAGTGAATGGCAGGAAGCATGGAATGAAGATGGAGAAAAATCAAAGGATCAAGGATCTGACCTACATGATGCATTCTGGAAGAAGCTAAAGTTCGCTGCTGAGCAGAA
GGTGGGCAAGCTTGAAGCAGAGAGATTCTGTAACTCATTTCAACAGATTCACAATAAACTTGTTAACGAAGAACTGAGTTCAGATGCTGCCCGGAGCTTTCTGGAGTCGT
TCAGTTGCAGTTCCACAGAATAGTGGAGTCGAGAATTCCAACGCCAATAGGTGAATTTCAAGAAAGTTTTCCATGACATGATAATATCTCAACCATTCCGACCACCGACA
CAAAAGGGATAAATAATAACCTCCAAATCATGGGAGGACTCACATCCATAAATTTTTATACTTCATGACAGACAATAGTTATGTTGTTTGAGATATGGGCTGCATCATAT
TCAGCCAGATAAAATAGTATAGAAACTATAAGAAAGCTTCCTGAAGTGAAACCCTTCATTATTCGTTCAATGTAAGGTGTAAATGTATGAGTAATAAGATGTGTCACATC
TTGGAAGCATCGGCTGCAAGTTGGTTGAAGGCAATGGAAGTCTTCGAACCCGATGGCCGCCCCAAATGGTTGCTGATGAAGTTCCCAGCAGACATGACCTTTGCCAAATC
CACATTGGTTTTTATGCCAAGTCCGTGGAGCATGTACACCACATCCTCAGTTGCAACATTCCCGGAAGCTCCTTTTGCATATGGACATCCACCCAGACCTGCAACAGAGG
AATCTATTGTGCTAATCCCCATCTGTTCATAAAAGCAACACACCAGTTAATGGTTGAAGTTGGCCCAAATGAAATGAAATCCTAGGCAAAGCTTGCAACTTCCATCCATA
TATCTGGAAAGCAAGTTTGGCAGGGACCAAGTATATGTTTGAAATGACTTTCAAGTGTTTAAAGACATATTTTTCTCAACCGTGTCATTATCATAATGTTTCGTTAGATA
GGAACAAATTTGATAAATACCGATAATTCTTGGATGGAGTATTAGAACGAAAAAATCCATTAG
Protein sequenceShow/hide protein sequence
MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGK
RKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKDPIATMDESEFRRLLQLFPVVRSRDYHAESELSRQSTSKSSKSELSEWQEAWNEDGEKSKDQGSDLH
DAFWKKLKFAAEQKVGKLEAERFCNSFQQIHNKLVNEELSSDAARSFLESFSCSSTE