CuGenDBv2

Gene ID	CmoCh20G001390
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	pentatricopeptide repeat-containing protein At4g14170-like isoform X1
Genome location	Cmo_Chr20:697961..698282
RNA-Seq Expression	CmoCh20G001390
Synteny	CmoCh20G001390
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6570443.1 Pentatricopeptide repeat-containing protein DOT4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.2e-36

88.89

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Query:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI
        MLQFCIRSFRFHFAQIARFQFRN+VRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA  Q+    C++
Subjt:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI

KAG6570451.1 Pentatricopeptide repeat-containing protein DOT4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.2e-36

88.89

Show/hide

Query:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI
        MLQFCIRSFRFHFAQIARFQFRN+VRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA  Q+    C++
Subjt:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI

XP_022944174.1 pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like isoform X1 [Cucurbita moschata]

3.6e-35

87.78

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Query:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI
        MLQFCIRS RFHFAQIARFQFRNYVR TEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA  Q+    C++
Subjt:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI

XP_022944177.1 pentatricopeptide repeat-containing protein At4g14170-like isoform X1 [Cucurbita moschata]

4.2e-36

88.89

Show/hide

Query:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI
        MLQFCIRSFRFHFAQIARFQFRN+VRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA  Q+    C++
Subjt:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI

XP_022944178.1 pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like isoform X2 [Cucurbita moschata]

4.2e-36

88.89

Show/hide

Query:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI
        MLQFCIRSFRFHFAQIARFQFRN+VRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA  Q+    C++
Subjt:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FV31 pentatricopeptide repeat-containing protein At4g14170-like isoform X1

2.1e-36

88.89

Show/hide

Query:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI
        MLQFCIRSFRFHFAQIARFQFRN+VRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA  Q+    C++
Subjt:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI

A0A6J1FW82 pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like isoform X1

1.7e-35

87.78

Show/hide

Query:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI
        MLQFCIRS RFHFAQIARFQFRNYVR TEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA  Q+    C++
Subjt:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI

A0A6J1FXS7 pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like isoform X2

2.1e-36

88.89

Show/hide

Query:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI
        MLQFCIRSFRFHFAQIARFQFRN+VRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA  Q+    C++
Subjt:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI

A0A6J1FYI3 pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like isoform X2

1.7e-35

87.78

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Query:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI
        MLQFCIRS RFHFAQIARFQFRNYVR TEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA  Q+    C++
Subjt:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI

A0A6J1JDW1 pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like isoform X2

3.9e-35

86.67

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Query:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI
        MLQFCIRS RFHFAQIARFQFRNYVR TEPNSSVHINLLTLCFN+QSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA  Q+    C++
Subjt:  MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTACAGTTTTGTATTCGAAGCTTTAGATTTCACTTCGCTCAAATCGCTCGATTCCAATTCAGAAACTACGTTCGAAGAACAGAGCCAAATTCTTCCGTTCACATCAA
CCTCCTCACCCTGTGCTTCAACGCTCAATCGCTTCGTCAAACCAAAGAAGTCCACGCCATTTGCCTTCTCAATGGCTTGCTTCCTCATAGTGTATCACTCTGTGCTTCCC
TTATTCTTAATTACGCCAACACCCAGAATCGTTCTGTACTCTGTTCCATCAAACTGTCCAGAATTGTCGTACTGCGTTCCTGTGGAATACCTTGA

mRNA sequence

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Protein sequence

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MLQFCIRSFRFHFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSIKLSRIVVLRSCGIP

CmoCh20G001390 (gene) of Cucurbita moschata (Rifu) v1 genome