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CmoCh20G001540 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G001540
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionreplication factor C subunit 1-like isoform X1
Genome locationCmo_Chr20:758015..761255
RNA-Seq ExpressionCmoCh20G001540
SyntenyCmoCh20G001540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570456.1 Replication factor C subunit 1, partial [Cucurbita argyrosperma subsp. sororia]2.4e-0439.39Show/hide
Query:  SCSWREHLQAENLTLFLKRLTEPLASCLRMKQLKCCQNFRVVRIYWMACPCCEICSNKGIQRSKQDTYGDTVPAMKKSPKKA-KTLELLGQQGCSCQLF
        SCSWREHLQAENLTLFLKRLTEPL      + +K    F  + +Y +     +        + +++      PA+K +  KA K LEL G +  S + F
Subjt:  SCSWREHLQAENLTLFLKRLTEPLASCLRMKQLKCCQNFRVVRIYWMACPCCEICSNKGIQRSKQDTYGDTVPAMKKSPKKA-KTLELLGQQGCSCQLF

KAG7010318.1 Replication factor C subunit 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-0835.59Show/hide
Query:  CVIPESVILTDL-----------------------------SCSWREHLQAENLTLFLKRLTEPLASCLRMKQLKCCQNFRVVRIYWMACPCCEICSNKG
        C   ESVILTDL                             SCSWREHLQAENLTLFLKRLTEPL      + +K    F  + +Y +     +      
Subjt:  CVIPESVILTDL-----------------------------SCSWREHLQAENLTLFLKRLTEPLASCLRMKQLKCCQNFRVVRIYWMACPCCEICSNKG

Query:  IQRSKQDTYGDTVPAMKKSPKKA----------------KTLELLGQQ-GCSCQLFLVAIIEDSTNGEKLRLELQSL
          + +++      PA+K +  KA                  L LLG+    SCQLFLVAIIEDSTN   ++LEL+ +
Subjt:  IQRSKQDTYGDTVPAMKKSPKKA----------------KTLELLGQQ-GCSCQLFLVAIIEDSTNGEKLRLELQSL

XP_022986994.1 replication factor C subunit 1-like isoform X1 [Cucurbita maxima]6.6e-1556Show/hide
Query:  MYKFKGIDSSNSLKSSSIASCVIPESVILTDL-----------------------------SCSWREHLQAENLTLFLKRLTEPLASCLRMKQLKCCQNF
        MYKFKGIDSSNSLKSSSIASCVIPESVIL DL                             SCSWREHLQAENLT FLKRLTEPL      + +K    F
Subjt:  MYKFKGIDSSNSLKSSSIASCVIPESVILTDL-----------------------------SCSWREHLQAENLTLFLKRLTEPLASCLRMKQLKCCQNF

XP_023512207.1 replication factor C subunit 1-like [Cucurbita pepo subsp. pepo]4.0e-1250.48Show/hide
Query:  MYKFKGIDSSNSLKSSSIASCVIPESV-------------------------ILTDL---------SCSWREHLQAENLTLFLKRLTEPLASCLRMKQLK
        MYKFKGIDSSNSLKSSSIASCVIPE++                         +L D          SCSWREHLQAENLTLFLKRLTEPL      + +K
Subjt:  MYKFKGIDSSNSLKSSSIASCVIPESV-------------------------ILTDL---------SCSWREHLQAENLTLFLKRLTEPLASCLRMKQLK

Query:  CCQNF
            F
Subjt:  CCQNF

TrEMBL top hitse value%identityAlignment
A0A6J1JHL7 replication factor C subunit 1-like isoform X13.2e-1556Show/hide
Query:  MYKFKGIDSSNSLKSSSIASCVIPESVILTDL-----------------------------SCSWREHLQAENLTLFLKRLTEPLASCLRMKQLKCCQNF
        MYKFKGIDSSNSLKSSSIASCVIPESVIL DL                             SCSWREHLQAENLT FLKRLTEPL      + +K    F
Subjt:  MYKFKGIDSSNSLKSSSIASCVIPESVILTDL-----------------------------SCSWREHLQAENLTLFLKRLTEPLASCLRMKQLKCCQNF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAAATTCAAAGGCATCGACAGTAGCAACTCTCTCAAGAGTAGTTCTATTGCTTCTTGTGTAATACCGGAGAGTGTAATTTTAACAGATTTGTCCTGTTCATGGAG
GGAACACCTACAAGCTGAGAACCTTACTCTTTTTCTAAAGAGGTTGACTGAGCCACTGGCAAGCTGCCTGAGAATGAAGCAGTTAAAATGTTGTCAAAATTTCAGGGTCG
TAAGAATTTATTGGATGGCGTGCCCCTGCTGTGAAATATGCTCTAACAAAGGCATACAAAGAAGTAAGCAAGACACGTATGGGGATACAGTTCCTGCAATGAAAAAAAGC
CCCAAAAAAGCGAAGACTCTAGAACTCTTGGGACAACAAGGGTGCAGTTGCCAATTATTCCTTGTTGCAATTATAGAAGACTCCACAAACGGTGAGAAGTTGCGACTGGA
ACTTCAAAGCTTGATTGGAATTGAAAGGCGTGGAAAATTCAAGCTTCAAGAAATTCGGTGGCAGAGGAAGAGGAGGGGCAGATTAGAAGCATGCAGGTTTACCTGCCCAT
ACATCTTGGCCAGACTCAACTTACAGATCCCACTTCCACCACGGACAATGAATAAGGTATACAAAATAGATTTGTATTATGTACTCCAAAACATTGAATTTAAAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTACAAATTCAAAGGCATCGACAGTAGCAACTCTCTCAAGAGTAGTTCTATTGCTTCTTGTGTAATACCGGAGAGTGTAATTTTAACAGATTTGTCCTGTTCATGGAG
GGAACACCTACAAGCTGAGAACCTTACTCTTTTTCTAAAGAGGTTGACTGAGCCACTGGCAAGCTGCCTGAGAATGAAGCAGTTAAAATGTTGTCAAAATTTCAGGGTCG
TAAGAATTTATTGGATGGCGTGCCCCTGCTGTGAAATATGCTCTAACAAAGGCATACAAAGAAGTAAGCAAGACACGTATGGGGATACAGTTCCTGCAATGAAAAAAAGC
CCCAAAAAAGCGAAGACTCTAGAACTCTTGGGACAACAAGGGTGCAGTTGCCAATTATTCCTTGTTGCAATTATAGAAGACTCCACAAACGGTGAGAAGTTGCGACTGGA
ACTTCAAAGCTTGATTGGAATTGAAAGGCGTGGAAAATTCAAGCTTCAAGAAATTCGGTGGCAGAGGAAGAGGAGGGGCAGATTAGAAGCATGCAGGTTTACCTGCCCAT
ACATCTTGGCCAGACTCAACTTACAGATCCCACTTCCACCACGGACAATGAATAAGGTATACAAAATAGATTTGTATTATGTACTCCAAAACATTGAATTTAAAAATTAA
AAAAAAAAAAAAATACTCCACGACCTTTTCTCCTACCAGCAGCCCACCAAAGTCGAGTTGTCCCTCCTTACAGATCCTCCTCTGTGTATGATACCATCTGCATCAACAGA
TGTAAATTTCTTATCTACAGTCTTAACAATAATATGGTGTGAATTCGTGCAATTTTTCAATTGGAAGCCCTAAACCTTGTCCTAAACTTTGGAATTGCCTGGATTTCATT
AACTTTCATGC
Protein sequenceShow/hide protein sequence
MYKFKGIDSSNSLKSSSIASCVIPESVILTDLSCSWREHLQAENLTLFLKRLTEPLASCLRMKQLKCCQNFRVVRIYWMACPCCEICSNKGIQRSKQDTYGDTVPAMKKS
PKKAKTLELLGQQGCSCQLFLVAIIEDSTNGEKLRLELQSLIGIERRGKFKLQEIRWQRKRRGRLEACRFTCPYILARLNLQIPLPPRTMNKVYKIDLYYVLQNIEFKN