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CmoCh20G001550 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G001550
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPlant-specific transcription factor YABBY family protein
Genome locationCmo_Chr20:765092..768680
RNA-Seq ExpressionCmoCh20G001550
SyntenyCmoCh20G001550
Gene Ontology termsGO:0007275 - multicellular organism development (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR006780 - YABBY protein
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022943971.1 putative axial regulator YABBY 2 isoform X1 [Cucurbita moschata]2.7e-53100Show/hide
Query:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
        GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
Subjt:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC

Query:  GQKVDGNKQTK
        GQKVDGNKQTK
Subjt:  GQKVDGNKQTK

XP_022943974.1 putative axial regulator YABBY 2 isoform X3 [Cucurbita moschata]2.7e-53100Show/hide
Query:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
        GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
Subjt:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC

Query:  GQKVDGNKQTK
        GQKVDGNKQTK
Subjt:  GQKVDGNKQTK

XP_022986990.1 putative axial regulator YABBY 2 isoform X2 [Cucurbita maxima]2.7e-53100Show/hide
Query:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
        GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
Subjt:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC

Query:  GQKVDGNKQTK
        GQKVDGNKQTK
Subjt:  GQKVDGNKQTK

XP_023512204.1 putative axial regulator YABBY 2 isoform X1 [Cucurbita pepo subsp. pepo]2.7e-53100Show/hide
Query:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
        GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
Subjt:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC

Query:  GQKVDGNKQTK
        GQKVDGNKQTK
Subjt:  GQKVDGNKQTK

XP_023512206.1 putative axial regulator YABBY 2 isoform X3 [Cucurbita pepo subsp. pepo]2.7e-53100Show/hide
Query:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
        GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
Subjt:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC

Query:  GQKVDGNKQTK
        GQKVDGNKQTK
Subjt:  GQKVDGNKQTK

TrEMBL top hitse value%identityAlignment
A0A6J1FT58 putative axial regulator YABBY 2 isoform X11.3e-53100Show/hide
Query:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
        GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
Subjt:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC

Query:  GQKVDGNKQTK
        GQKVDGNKQTK
Subjt:  GQKVDGNKQTK

A0A6J1FVQ9 putative axial regulator YABBY 2 isoform X31.3e-53100Show/hide
Query:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
        GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
Subjt:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC

Query:  GQKVDGNKQTK
        GQKVDGNKQTK
Subjt:  GQKVDGNKQTK

A0A6J1FXJ5 putative axial regulator YABBY 2 isoform X23.0e-5097.3Show/hide
Query:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
        GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIR  +KKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
Subjt:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC

Query:  GQKVDGNKQTK
        GQKVDGNKQTK
Subjt:  GQKVDGNKQTK

A0A6J1JFK2 putative axial regulator YABBY 2 isoform X21.3e-53100Show/hide
Query:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
        GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC
Subjt:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRC

Query:  GQKVDGNKQTK
        GQKVDGNKQTK
Subjt:  GQKVDGNKQTK

A0A6J1JI62 putative axial regulator YABBY 2 isoform X41.4e-39100Show/hide
Query:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN
        GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN
Subjt:  GNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN

SwissProt top hitse value%identityAlignment
O22152 Axial regulator YABBY 17.5e-2272.97Show/hide
Query:  QHRI---PPI-RPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK
        QH I   PP+ RPPEK+QRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAH+PHI  G   D     K
Subjt:  QHRI---PPI-RPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK

Q10FZ7 Protein YABBY 23.7e-2165.43Show/hide
Query:  SSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCG
        S   SSS+  ++  + S    +H +  +RPPEK+QRVPSAYNRFIKEEI+RIKANNPDISHREAFSTAAKNWAH+P+I  G
Subjt:  SSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCG

Q8GW46 Axial regulator YABBY 53.6e-2468.18Show/hide
Query:  SSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK
        SSS   TKI S  S      +    RPPEK+QRVPSAYN+FIKEEIQRIKANNPDISHREAFSTAAKNWAH+PHI  G  ++ NKQ K
Subjt:  SSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK

Q9XFB0 Putative axial regulator YABBY 27.7e-2766.33Show/hide
Query:  KDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK
        KD  SSS S+++ S        ++ +R+  R+PPIRPPEK+QRVPSAYNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAH+PHI  G K+DGNK+ K
Subjt:  KDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK

Q9XFB1 Axial regulator YABBY 31.7e-2170.83Show/hide
Query:  SLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVD
        S+D  +      P  RPPEK+QRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAH+PHI  G   D
Subjt:  SLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVD

Arabidopsis top hitse value%identityAlignment
AT1G08465.1 Plant-specific transcription factor YABBY family protein5.5e-2866.33Show/hide
Query:  KDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK
        KD  SSS S+++ S        ++ +R+  R+PPIRPPEK+QRVPSAYNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAH+PHI  G K+DGNK+ K
Subjt:  KDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK

AT2G26580.1 plant-specific transcription factor YABBY family protein2.5e-2568.18Show/hide
Query:  SSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK
        SSS   TKI S  S      +    RPPEK+QRVPSAYN+FIKEEIQRIKANNPDISHREAFSTAAKNWAH+PHI  G  ++ NKQ K
Subjt:  SSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK

AT2G26580.2 plant-specific transcription factor YABBY family protein2.5e-2568.18Show/hide
Query:  SSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK
        SSS   TKI S  S      +    RPPEK+QRVPSAYN+FIKEEIQRIKANNPDISHREAFSTAAKNWAH+PHI  G  ++ NKQ K
Subjt:  SSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK

AT2G45190.1 Plant-specific transcription factor YABBY family protein5.3e-2372.97Show/hide
Query:  QHRI---PPI-RPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK
        QH I   PP+ RPPEK+QRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAH+PHI  G   D     K
Subjt:  QHRI---PPI-RPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVDGNKQTK

AT4G00180.1 Plant-specific transcription factor YABBY family protein1.2e-2270.83Show/hide
Query:  SLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVD
        S+D  +      P  RPPEK+QRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAH+PHI  G   D
Subjt:  SLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCGQKVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCGCGGGCGGGCGCGCGCGCACAGGGAGAGGCAGGCGATGGGTAATAAACAGCAGCAGGTGAGTGGTGGGGATTGGAGCAAGGACAGAGGCTCTTCTTCT
TCTTCCTCTTCTTCCTCTTCAAAATGCACTAAAATTGCCTCTCTTGATTCTGCTGAACGTGACCAACACAGAATCCCTCCTATTCGCCCACCAGAGAAGAAACAG
CGTGTTCCTTCAGCATATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCGAACAATCCCGACATTAGCCACAGAGAAGCCTTTAGCACCGCCGCTAAA
AATTGGGCACATTATCCTCACATCCGTTGTGGGCAGAAGGTGGATGGAAACAAGCAAACAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCGCGGGCGGGCGCGCGCGCACAGGGAGAGGCAGGCGATGGGTAATAAACAGCAGCAGGTGAGTGGTGGGGATTGGAGCAAGGACAGAGGCTCTTCTTCT
TCTTCCTCTTCTTCCTCTTCAAAATGCACTAAAATTGCCTCTCTTGATTCTGCTGAACGTGACCAACACAGAATCCCTCCTATTCGCCCACCAGAGAAGAAACAG
CGTGTTCCTTCAGCATATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCGAACAATCCCGACATTAGCCACAGAGAAGCCTTTAGCACCGCCGCTAAA
AATTGGGCACATTATCCTCACATCCGTTGTGGGCAGAAGGTGGATGGAAACAAGCAAACAAAATAAGCTTGAATTTGACCGGAGATCATCACAGTCCATCCGATT
ATCCAATGGGGTTCTGCCACCTGTTAATTCTAGAGATGATGATGACGTGTCAATAGATTAAATACTAAATAAAACATCTTTTTTTGTTTTTTTAATTAATGTGTA
TTAATTTAGATTCTATTATTTCCAACAAAAATTGAGGTTGACGAAGTCCTCCTGCCCTGACCCTATAGGAAAATAAATTGCTTTGATAACCTCACCCCGCTCTCC
CATGTCCTTTAAATACGTGTGATGTAATAACAAGTGAGATTAATGTTATTACATATTTATAATCTATTTATTAAGTCGATTATGTCTCGAAATTGACTTTTGAGA
TGATAATTGACACAGTCCAAGCCA
Protein sequenceShow/hide protein sequence
MRRGRARAHRERQAMGNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIASLDSAERDQHRIPPIRPPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAK
NWAHYPHIRCGQKVDGNKQTK