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CmoCh20G001710 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G001710
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionProtein GL2-INTERACTING REPRESSOR 1
Genome locationCmo_Chr20:863095..863409
RNA-Seq ExpressionCmoCh20G001710
SyntenyCmoCh20G001710
Gene Ontology termsGO:0080147 - root hair cell development (biological process)
GO:0005515 - protein binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570472.1 NAC domain-containing protein 40, partial [Cucurbita argyrosperma subsp. sororia]8.8e-50100Show/hide
Query:  MSKRSRSSEPKVELRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQ
        MSKRSRSSEPKVELRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQ
Subjt:  MSKRSRSSEPKVELRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQ

Query:  QHH
        QHH
Subjt:  QHH

KAG6605971.1 hypothetical protein SDJN03_03288, partial [Cucurbita argyrosperma subsp. sororia]2.8e-2766.36Show/hide
Query:  MSKRSRSSEPKVELRVNLNRLPSPATSSLSG---SGSSSDISVENSCLG-WEGGVEEE--IITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFK
        MSKR RSSE +V LRV++NR P+ ++ S+ G   SG  SD+SVE+SCL  W+G VEE+  I+TRSMMLVGCPGCFMYVMLT+KSSQCPKC NNVFLDFF 
Subjt:  MSKRSRSSEPKVELRVNLNRLPSPATSSLSG---SGSSSDISVENSCLG-WEGGVEEE--IITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFK

Query:  HQQQQQQHHA
            QQ+HHA
Subjt:  HQQQQQQHHA

KAG7010337.1 hypothetical protein SDJN02_27130, partial [Cucurbita argyrosperma subsp. argyrosperma]9.7e-4998.11Show/hide
Query:  MSKRSRSSEPKVELRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKH--QQQ
        MSKRSRSSEPKVELRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKH  QQQ
Subjt:  MSKRSRSSEPKVELRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKH--QQQ

Query:  QQQHHA
        QQQHHA
Subjt:  QQQHHA

KAG7035922.1 hypothetical protein SDJN02_02722, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-2766.36Show/hide
Query:  MSKRSRSSEPKVELRVNLNRLPSPATSSLSG---SGSSSDISVENSCLG-WEGGVEEE--IITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFK
        MSKR RSSE +V LRV++NR P+ ++ S+ G   SG  SD+SVE+SCL  W+G VEE+  I+TRSMMLVGCPGCFMYVMLT+KSSQCPKC NNVFLDFF 
Subjt:  MSKRSRSSEPKVELRVNLNRLPSPATSSLSG---SGSSSDISVENSCLG-WEGGVEEE--IITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFK

Query:  HQQQQQQHHA
            QQ+HHA
Subjt:  HQQQQQQHHA

KGN48041.1 hypothetical protein Csa_002820 [Cucumis sativus]1.3e-2973.68Show/hide
Query:  MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGS-SSDISVENSCLGWE----GGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFL
        MSKRSRSSE +VELRVNLNR P+ ++SS S     GSGS SS+ISV NSCL  E    GG  EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFL
Subjt:  MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGS-SSDISVENSCLGWE----GGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFL

Query:  DFFKHQQQQQQHHA
        DFFK    QQ HHA
Subjt:  DFFKHQQQQQQHHA

TrEMBL top hitse value%identityAlignment
A0A0A0KJX5 Uncharacterized protein6.4e-3073.68Show/hide
Query:  MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGS-SSDISVENSCLGWE----GGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFL
        MSKRSRSSE +VELRVNLNR P+ ++SS S     GSGS SS+ISV NSCL  E    GG  EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFL
Subjt:  MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGS-SSDISVENSCLGWE----GGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFL

Query:  DFFKHQQQQQQHHA
        DFFK    QQ HHA
Subjt:  DFFKHQQQQQQHHA

A0A2I4FHX4 uncharacterized protein LOC1089989263.0e-1147.71Show/hide
Query:  MSKRSRSSEPKVELRVNLN---RLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIIT----------RSMMLVGCPGCFMYVMLTEKSSQCPKCHNN
        MSKR+    PK+EL +NL+   R  SPA S    + SSS+ISVE SC+  E   E++ +T          RSMMLVGCP C MYVML+E   +CPKC + 
Subjt:  MSKRSRSSEPKVELRVNLN---RLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIIT----------RSMMLVGCPGCFMYVMLTEKSSQCPKCHNN

Query:  VFLDFFKHQ
        V LDF K +
Subjt:  VFLDFFKHQ

A0A5D3BBS4 Uncharacterized protein5.1e-2769.3Show/hide
Query:  MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGSSSDISVENSCLGWE-----GGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFL
        MSKRSRSSE +VELRVNLN+ P+ ++SS S     GSGS S     +SCL  E     GG  EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFL
Subjt:  MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGSSSDISVENSCLGWE-----GGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFL

Query:  DFFKHQQQQQQHHA
        DFFK   QQ QHHA
Subjt:  DFFKHQQQQQQHHA

A0A660KQ11 Uncharacterized protein1.0e-1146.23Show/hide
Query:  RSSEPKVELRVNLN----RLP---SPATSSLSGSGSSSDISVENSCLGWEGGVEEEIIT-------RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLD
        R   PK+EL +NL+      P   SP  S+ S S SSSD+SVE SC+  E G E  + T       +SMMLVGCP C MYVML++ + +CPKC + V LD
Subjt:  RSSEPKVELRVNLN----RLP---SPATSSLSGSGSSSDISVENSCLGWEGGVEEEIIT-------RSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLD

Query:  FFKHQQ
        F K ++
Subjt:  FFKHQQ

V7AGR8 Uncharacterized protein2.3e-1146.3Show/hide
Query:  MSKRSRSSEPKVELRVNLNRLPSPATSS--LSGSGSSSDISV---ENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKH
        M KR+RS  P++E+R++L+   +P +SS   S S +SS +SV   E+SC+  E  VEE   TR+M+LVGCP C MYVML+E   +CPKC + V LDF K+
Subjt:  MSKRSRSSEPKVELRVNLNRLPSPATSS--LSGSGSSSDISV---ENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKH

Query:  QQQQQQHH
        ++  +++H
Subjt:  QQQQQQHH

SwissProt top hitse value%identityAlignment
Q9FMS4 Protein salt-induced and EIN3/EIL1-dependent 14.7e-0642.5Show/hide
Query:  LRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLT-EKSSQCPKCHNNVFLDF
        L + LN  PS  +S L+ S SSS  S E      EGG  E    +SM++VGCP C MY++ + E   +CP+C+++V LDF
Subjt:  LRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLT-EKSSQCPKCHNNVFLDF

Q9FNI1 Protein GL2-INTERACTING REPRESSOR 11.4e-1043.4Show/hide
Query:  MSKRSRSSEPKVELRVNLNRLPSPATSSL-------SGSGSSSDISVENSCLGWEGGVEEEII-------TRSMMLVGCPGCFMYVMLTEKSSQCPKCHN
        MS+RS    PK+EL++NL    SP TSS        S S ++S  S  +SC+  E   +E  +       T SM+LVGCP C MYVML+E   +CPKC +
Subjt:  MSKRSRSSEPKVELRVNLNRLPSPATSSL-------SGSGSSSDISVENSCLGWEGGVEEEII-------TRSMMLVGCPGCFMYVMLTEKSSQCPKCHN

Query:  NVFLDF
         V LDF
Subjt:  NVFLDF

Q9SRN4 Protein GL2-INTERACTING REPRESSOR 25.2e-1345.26Show/hide
Query:  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFK
        MS+R+++  PK+ELR+NL+  PS A+  SL  S + S+ +  +SC+  E   EE     SM+LVGCP C MYVML++   +CPKC + V LDF +
Subjt:  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFK

Arabidopsis top hitse value%identityAlignment
AT3G11600.1 unknown protein3.7e-1445.26Show/hide
Query:  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFK
        MS+R+++  PK+ELR+NL+  PS A+  SL  S + S+ +  +SC+  E   EE     SM+LVGCP C MYVML++   +CPKC + V LDF +
Subjt:  MSKRSRSSEPKVELRVNLNRLPSPATS-SLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFK

AT3G52561.1 unknown protein1.2e-0436.23Show/hide
Query:  ATSSLSGSGSSSDI-SVENSCLGWEGGVEEEIITR--------SMMLVGCPGCFMYVMLTEKSSQCPKC
        A     G   SSD  S +NSCL     V+EE+ +          M+++GC  C MYVM+ ++  +CPKC
Subjt:  ATSSLSGSGSSSDI-SVENSCLGWEGGVEEEIITR--------SMMLVGCPGCFMYVMLTEKSSQCPKC

AT5G06270.1 unknown protein1.0e-1143.4Show/hide
Query:  MSKRSRSSEPKVELRVNLNRLPSPATSSL-------SGSGSSSDISVENSCLGWEGGVEEEII-------TRSMMLVGCPGCFMYVMLTEKSSQCPKCHN
        MS+RS    PK+EL++NL    SP TSS        S S ++S  S  +SC+  E   +E  +       T SM+LVGCP C MYVML+E   +CPKC +
Subjt:  MSKRSRSSEPKVELRVNLNRLPSPATSSL-------SGSGSSSDISVENSCLGWEGGVEEEII-------TRSMMLVGCPGCFMYVMLTEKSSQCPKCHN

Query:  NVFLDF
         V LDF
Subjt:  NVFLDF

AT5G22270.1 unknown protein3.4e-0742.5Show/hide
Query:  LRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLT-EKSSQCPKCHNNVFLDF
        L + LN  PS  +S L+ S SSS  S E      EGG  E    +SM++VGCP C MY++ + E   +CP+C+++V LDF
Subjt:  LRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLT-EKSSQCPKCHNNVFLDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAGAGGTCGAGAAGTAGCGAGCCAAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCATCGGA
CATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGCGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTGATGT
TGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAACGTCTTCCTTGATTTCTTCAAGCACCAGCAGCAGCAGCAGCAGCATCATGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCAAGAGGTCGAGAAGTAGCGAGCCAAAGGTCGAGTTGAGAGTGAACCTGAACCGGTTGCCATCGCCAGCGACGTCGTCTTTGTCGGGGTCGGGGTCGTCATCGGA
CATATCGGTGGAGAATTCGTGCTTGGGGTGGGAGGGGGGCGTGGAAGAAGAGATAATAACAAGATCCATGATGCTGGTGGGATGTCCGGGGTGCTTCATGTATGTGATGT
TGACCGAGAAGAGCTCCCAATGCCCCAAATGCCACAACAACGTCTTCCTTGATTTCTTCAAGCACCAGCAGCAGCAGCAGCAGCATCATGCCTAG
Protein sequenceShow/hide protein sequence
MSKRSRSSEPKVELRVNLNRLPSPATSSLSGSGSSSDISVENSCLGWEGGVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQHHA