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CmoCh20G001970 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G001970
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S acidic ribosomal protein family
Genome locationCmo_Chr20:966215..967665
RNA-Seq ExpressionCmoCh20G001970
SyntenyCmoCh20G001970
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570492.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]9.0e-4697.27Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGG AGGGAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG
        EKEESDD  G
Subjt:  EKEESDDGCG

KAG7010354.1 60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]9.0e-4697.27Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGG AGGGAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG
        EKEESDD  G
Subjt:  EKEESDDGCG

XP_022944125.1 60S acidic ribosomal protein P2B-like [Cucurbita moschata]3.1e-4698.18Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG
        EKEESDD  G
Subjt:  EKEESDDGCG

XP_022986046.1 60S acidic ribosomal protein P2B-like [Cucurbita maxima]2.6e-4596.36Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGG AGGGAAPAA EQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG
        EKEESDD  G
Subjt:  EKEESDDGCG

XP_023512871.1 60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo]7.7e-4596.36Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGG AGGGAA AAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG
        EKEESDD  G
Subjt:  EKEESDDGCG

TrEMBL top hitse value%identityAlignment
A0A6J1DJB9 60S acidic ribosomal protein P2B-like1.1e-4190Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVG EVDEDRI+SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAAAE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG
        EKE+SDD  G
Subjt:  EKEESDDGCG

A0A6J1FYH3 60S acidic ribosomal protein P2B-like1.5e-4698.18Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG
        EKEESDD  G
Subjt:  EKEESDDGCG

A0A6J1GZW9 60S acidic ribosomal protein P2B-like3.6e-4090.91Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD DRI+SLL+QVKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAAAE KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG
        EKEESDD  G
Subjt:  EKEESDDGCG

A0A6J1J9Z4 60S acidic ribosomal protein P2B-like1.3e-4596.36Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGG AGGGAAPAA EQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG
        EKEESDD  G
Subjt:  EKEESDDGCG

A0A6J1KA82 60S acidic ribosomal protein P2B-like4.0e-3989.09Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVDE+RI+SLL+QVKGKDITELI SGREKLASVPSGGGAV +AA AGG AGGGAAPAAAE KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG
        EKEESDD  G
Subjt:  EKEESDDGCG

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B7.7e-3271.82Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKV+AAYLLAVLGGNTSP  DDVK IL SVGAE DE++++ LL+++K KDITE+IA+GRE+L+SVPSGGGA+ + APA  VAGGGAAP A E KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG
        EKEESD+  G
Subjt:  EKEESDDGCG

P41099 60S acidic ribosomal protein P21.2e-2770Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAA--EQKKEEK
        MKV+AA+LLA+LGGNTSP  +D+K IL SVGA+ D+D+I+ LLSQVKGKDITELIASGRE+LASVPSGGG V +AA AGG  GGG APAAA  E KKEEK
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAA--EQKKEEK

Query:  VEEKEESDDG
         EE+ + + G
Subjt:  VEEKEESDDG

P46252 60S acidic ribosomal protein P2A6.1e-2970Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MK VAAYLLAVL GN SP  DD+  IL SVG EVD ++++ LLSQ+ GKDITELIA+GREK ASVP GGG V +AA A   A GGAAP AAE KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG
        EKEESDD  G
Subjt:  EKEESDDGCG

P51407 60S acidic ribosomal protein P2-17.5e-2765.52Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPS-GGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKV
        MKVVAA+LLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GREKLASVPS GGG V +A+   G  GGG AP AAE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPS-GGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKV

Query:  EEKEESDDGCG-SLIE
        EEKEESDD  G SL E
Subjt:  EEKEESDDGCG-SLIE

Q9SLF7 60S acidic ribosomal protein P2-21.7e-2664.35Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GREKLASVPSGGG     A A    GGG   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG-SLIE
        EKEESDD  G SL E
Subjt:  EKEESDDGCG-SLIE

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family1.2e-2764.35Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GREKLASVPSGGG     A A    GGG   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG-SLIE
        EKEESDD  G SL E
Subjt:  EKEESDDGCG-SLIE

AT2G27710.2 60S acidic ribosomal protein family1.2e-2764.35Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GREKLASVPSGGG     A A    GGG   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG-SLIE
        EKEESDD  G SL E
Subjt:  EKEESDDGCG-SLIE

AT2G27710.3 60S acidic ribosomal protein family1.2e-2764.35Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GREKLASVPSGGG     A A    GGG   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG-SLIE
        EKEESDD  G SL E
Subjt:  EKEESDDGCG-SLIE

AT2G27720.1 60S acidic ribosomal protein family5.3e-2865.52Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPS-GGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKV
        MKVVAA+LLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GREKLASVPS GGG V +A+   G  GGG AP AAE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPS-GGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKV

Query:  EEKEESDDGCG-SLIE
        EEKEESDD  G SL E
Subjt:  EEKEESDDGCG-SLIE

AT3G44590.2 60S acidic ribosomal protein family4.5e-2764.35Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE
        MKV AA+LLAVLGGN +P  D++K I+ +VGA+VD + I+ LL +V GKDI ELIASGREKLASVPSGGG    AAP+ G  GG AAPA   +KKE K E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDGCG-SLIE
        EKEESDD  G SL E
Subjt:  EKEESDDGCG-SLIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGTTGGGGCTGAGGTGGATGAGGA
CAGGATTGACTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGCTAGCGTCAGTTCCATCTGGTGGCGGTGCAGTCGGCA
TCGCCGCCCCTGCCGGCGGTGTCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCTGACGATGGCTGTGGT
AGCTTGATAGAGTACATGCACATAGAACTATTATATTAG
mRNA sequenceShow/hide mRNA sequence
CGCCCATTAACCGTTTTAGGCTCACGAAAGGCCCGAAAAAGAGAACCCTAATTATAAATTGTTGCATCCGCGACATTTGGCTTTTTACTATTTGACCGGCGGCTCCGATC
TCCCTTCCCTCTTGTTTGCGGCTTCTGTTACGAGCTTCTCAAAAATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGAT
GTGAAGTGTATTCTTAATTCAGTTGGGGCTGAGGTGGATGAGGACAGGATTGACTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACG
GGAGAAGCTAGCGTCAGTTCCATCTGGTGGCGGTGCAGTCGGCATCGCCGCCCCTGCCGGCGGTGTCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAG
AGGAGAAGGTCGAGGAGAAAGAAGAATCTGACGATGGCTGTGGTAGCTTGATAGAGTACATGCACATAGAACTATTATATTAG
Protein sequenceShow/hide protein sequence
MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG
SLIEYMHIELLY