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CmoCh20G002880 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G002880
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTransmembrane protein, putative
Genome locationCmo_Chr20:1391521..1394167
RNA-Seq ExpressionCmoCh20G002880
SyntenyCmoCh20G002880
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3444994.1 hypothetical protein FNV43_RR14687 [Rhamnella rubrinervis]6.1e-1264.52Show/hide
Query:  KTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG
        KTWSLK+V KELWPW+FS+F     + +    +VD+V FKI+ VVEA+VLVSTLCFFYLCCG
Subjt:  KTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG

KAG6570577.1 Conserved oligomeric Golgi complex subunit 5, partial [Cucurbita argyrosperma subsp. sororia]7.1e-2196.43Show/hide
Query:  MGKKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVS
        MGKKKTWSLKKVRKELWPWRFSLFGRNPMDL+MIHFVVDNVFFKIVSVVEAIVL S
Subjt:  MGKKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVS

KAG7010430.1 hypothetical protein SDJN02_27223, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-29100Show/hide
Query:  MGKKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG
        MGKKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG
Subjt:  MGKKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG

XP_011467587.1 PREDICTED: uncharacterized protein LOC105352357 [Fragaria vesca subsp. vesca]2.5e-1064.62Show/hide
Query:  KKTWSLKKV-RKELWPWRF-SLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG
        +KTWSLKKV  KELWP +F S+F    +DLR+   ++D+V FKI+SVVEA+VLVSTLCFF+LCCG
Subjt:  KKTWSLKKV-RKELWPWRF-SLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG

XP_015880074.1 uncharacterized protein LOC107416129 [Ziziphus jujuba]4.2e-1365.62Show/hide
Query:  KKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG
        KKK+WSLKKV KELWPWRFS   +   D   ++ ++D V FKI+SVVEA+VLVSTLCFF+LCCG
Subjt:  KKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG

TrEMBL top hitse value%identityAlignment
A0A1U7YQV9 uncharacterized protein LOC1045859592.7e-1057.58Show/hide
Query:  MGKKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG
        MG+K+ WS K + K  WPWRFS        L    F++D+V FKI+SV EAI+LVSTLCFFYLCCG
Subjt:  MGKKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG

A0A2P5A488 Uncharacterized protein3.6e-1057.53Show/hide
Query:  MGKKKTWSLKKVR-KELWPWRFSLFGR------NPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG
        MG  K WSLKKV  KE+WPWRFS F R         D      ++D+V FKI+ VVEA+VLVSTLCFF+LCCG
Subjt:  MGKKKTWSLKKVR-KELWPWRFSLFGR------NPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG

A0A2P5AFE1 Uncharacterized protein6.1e-1057.53Show/hide
Query:  MGKKKTWSLKKVR-KELWPWRFSLFGR------NPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG
        MG  K WSLKKV  KE WPWRFS F R         D      ++D+V FKI+ VVEA+VLVSTLCFF+LCCG
Subjt:  MGKKKTWSLKKVR-KELWPWRFSLFGR------NPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG

A0A6P3ZJJ1 uncharacterized protein LOC1074161292.0e-1365.62Show/hide
Query:  KKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG
        KKK+WSLKKV KELWPWRFS   +   D   ++ ++D V FKI+SVVEA+VLVSTLCFF+LCCG
Subjt:  KKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG

G7KD46 Transmembrane protein, putative1.6e-1060.29Show/hide
Query:  MGKKKT--WSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG
        MGKK +  W LKKV+KE+WPWRFS F    +D     F +D V F+I+SV EA+VLVST+CFFYLCCG
Subjt:  MGKKKT--WSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G06475.1 unknown protein1.8e-0660.53Show/hide
Query:  MDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG
        +++ M+  +VD V +K++ VVEA VLVSTLCFFYLCCG
Subjt:  MDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG

AT5G26790.1 unknown protein1.3e-0440.35Show/hide
Query:  WPWRFSLFGRNPM-------DLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG
        WP  F+  G  P        +L ++  VVD+V +K+V+  E++ LVS LCFF+L CG
Subjt:  WPWRFSLFGRNPM-------DLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGAAGAAGACATGGTCGTTGAAGAAGGTGAGGAAGGAGCTGTGGCCATGGCGGTTTTCACTCTTCGGAAGGAACCCAATGGATCTTCGGATGATTCATTTCGT
GGTTGATAATGTGTTCTTCAAGATCGTCTCTGTCGTGGAAGCCATTGTTTTGGTCTCTACACTCTGTTTTTTCTATCTATGCTGTGGCGGTGTTTTACAATCTAGTCCAG
GTGAATTGAAGGCGACCATCCAGCGATTGATGAGCAAGTATAAAGGCATGCTTCTCTTGTCAGACCTCTTTCTGAATCAGGAGAACTACGAATGGCTAGGGACATGGCTG
GGCTGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGAAGAAGACATGGTCGTTGAAGAAGGTGAGGAAGGAGCTGTGGCCATGGCGGTTTTCACTCTTCGGAAGGAACCCAATGGATCTTCGGATGATTCATTTCGT
GGTTGATAATGTGTTCTTCAAGATCGTCTCTGTCGTGGAAGCCATTGTTTTGGTCTCTACACTCTGTTTTTTCTATCTATGCTGTGGCGGTGTTTTACAATCTAGTCCAG
GTGAATTGAAGGCGACCATCCAGCGATTGATGAGCAAGTATAAAGGCATGCTTCTCTTGTCAGACCTCTTTCTGAATCAGGAGAACTACGAATGGCTAGGGACATGGCTG
GGCTGCAGTTAGCTTTGGGTCAAAATTTGTTCCCCGTAGAACAACTTGGTGCACCATATCAAGCTCTTCGTGCATTTCGTCCTCTTATATTTCTTGAAACATCGCAACTG
GAAGCATCTCCACTACTTCACGTTCTGCCAGCAAGTGTCATACTTCACCATCTTTATTCTCGGGGTCCTGAGGAATTGCAATCACCAATGCAAAGGAAGCTTTTACCGTG
GGCACGATAACTATTACACCAGAGATGTGTCCCTCCTGGTTCTCTCGTATTAGGGAAAGGTCCTCGGGTCAATGCAATTTTAAAAAAAGAATCGATTGTCTCCTCGGTAG
TACTCATTGTGGTTGGATTCTCAGGGTGAGGATCAAGTTTGGAAAGGTATTAAAGCAACTCTCAATGATTATGCCGCCAAGGTAAAGACCAGAGAGACAAGGAATTTAGC
TCAGTTTACCCTCGTATGCTTCAAGTAGGATCATCGTTGACAGAAAATT
Protein sequenceShow/hide protein sequence
MGKKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCGGVLQSSPGELKATIQRLMSKYKGMLLLSDLFLNQENYEWLGTWL
GCS