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CmoCh20G003050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G003050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 36
Genome locationCmo_Chr20:1491431..1492632
RNA-Seq ExpressionCmoCh20G003050
SyntenyCmoCh20G003050
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0009561 - megagametogenesis (biological process)
GO:0009791 - post-embryonic development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0090406 - pollen tube (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570593.1 DEAD-box ATP-dependent RNA helicase 36, partial [Cucurbita argyrosperma subsp. sororia]4.0e-4970.86Show/hide
Query:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEANLGKQLEIFEFKETEEIENDSK-----------------------------
        MDMLNQTQS LKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEANLGKQLEIFEFKETEEIENDSK                             
Subjt:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEANLGKQLEIFEFKETEEIENDSK-----------------------------

Query:  ---------------------VYKASYVAKMKMVDDGFEEKAKERKKTLAEKGLLKQRSKRRRKEKTSKQLTVDS
                             VYKASYVAKMKMVDDGFEEKAKERKKTLAEKGLLKQRSKRRRKEKTSKQLTVDS
Subjt:  ---------------------VYKASYVAKMKMVDDGFEEKAKERKKTLAEKGLLKQRSKRRRKEKTSKQLTVDS
KAG7010444.1 DEAD-box ATP-dependent RNA helicase 36, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-5699.2Show/hide
Query:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERKKTLA
        MDMLNQTQS LKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERKKTLA
Subjt:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERKKTLA

Query:  EKGLLKQRSKRRRKEKTSKQLTVDS
        EKGLLKQRSKRRRKEKTSKQLTVDS
Subjt:  EKGLLKQRSKRRRKEKTSKQLTVDS
XP_004139902.1 DEAD-box ATP-dependent RNA helicase 36 [Cucumis sativus]1.5e-1180Show/hide
Query:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
        MDMLNQTQS LKRPHIVIATPGR+KVLLE+NPDI VVFSKTK +   EA+
Subjt:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
XP_008456302.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Cucumis melo]9.6e-1978.48Show/hide
Query:  LIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKT
        LI  IEANLGKQLEIFE KE E +EN +KVYKA +VAKMKMVDDGFEEK KERK    KTLAEKGLLK+R+KRRRKEKT
Subjt:  LIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKT
XP_008456302.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Cucumis melo]1.9e-1182Show/hide
Query:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
        MDML+QTQS LKRPHIVIATPGRVKVLLEENPDI VVFSKTK +   EA+
Subjt:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
XP_008456302.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Cucumis melo]1.6e-1875.61Show/hide
Query:  KLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKTSK
        +LI  IEANLGKQLE FE KE E +EN +KVYKA +VAKMKMVDDGFEEK KERK    KTLAEKGLLK+R+KR+RKEKTSK
Subjt:  KLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKTSK
XP_038900331.1 DEAD-box ATP-dependent RNA helicase 36 [Benincasa hispida]1.9e-1182Show/hide
Query:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
        MDML+QTQS LKRPHIVIATPGRVKVLLEENPDI VVFSKTK +   EA+
Subjt:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
XP_038900331.1 DEAD-box ATP-dependent RNA helicase 36 [Benincasa hispida]2.8e-1876.54Show/hide
Query:  LIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKTSK
        LI  IEANLGKQLEIFE KE E +EN +KVYKA +VAKMKMVD GFEEK KERK    KTLAEKGLLK+R+KRRRKEKTS+
Subjt:  LIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKTSK
TrEMBL top hitse value%identityAlignment
A0A0A0KD72 Uncharacterized protein7.2e-1280Show/hide
Query:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
        MDMLNQTQS LKRPHIVIATPGR+KVLLE+NPDI VVFSKTK +   EA+
Subjt:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
A0A0A0KD72 Uncharacterized protein1.5e-1771.43Show/hide
Query:  KLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKTSKQL
        +LI  IEANLGK+LEIFE KE E +EN +KVYKA  VA MKMVDDGFEEK KERK    KTLAEKGLLK+RS++RR+EK SK+L
Subjt:  KLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKTSKQL
A0A1S3C309 DEAD-box ATP-dependent RNA helicase 369.4e-1282Show/hide
Query:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
        MDML+QTQS LKRPHIVIATPGRVKVLLEENPDI VVFSKTK +   EA+
Subjt:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
A0A1S3C309 DEAD-box ATP-dependent RNA helicase 361.4e-1876.54Show/hide
Query:  LIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKTSK
        LI  IEANLGKQLEIFE KE E +EN +KVYKA +VAKMKMVD GFEEK KERK    KTLAEKGLLK+R+KRRRKEKTS+
Subjt:  LIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKTSK
A0A5D3CBL8 DEAD-box ATP-dependent RNA helicase 364.7e-1978.48Show/hide
Query:  LIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKT
        LI  IEANLGKQLEIFE KE E +EN +KVYKA +VAKMKMVDDGFEEK KERK    KTLAEKGLLK+R+KRRRKEKT
Subjt:  LIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKT
A0A5D3CBL8 DEAD-box ATP-dependent RNA helicase 369.4e-1282Show/hide
Query:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
        MDML+QTQS LKRPHIVIATPGRVKVLLEENPDI VVFSKTK +   EA+
Subjt:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
A0A5D3CBL8 DEAD-box ATP-dependent RNA helicase 364.7e-1978.48Show/hide
Query:  LIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKT
        LI  IEANLGKQLEIFE KE E +EN +KVYKA +VAKMKMVDDGFEEK KERK    KTLAEKGLLK+R+KRRRKEKT
Subjt:  LIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKT
A0A6J1G6B4 DEAD-box ATP-dependent RNA helicase 367.2e-1282Show/hide
Query:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
        MDMLNQTQS LKRPHIVIATPGRVKVLLEENPDI  VFSKTK +   EA+
Subjt:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
A0A6J1L281 DEAD-box ATP-dependent RNA helicase 367.2e-1282Show/hide
Query:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
        MDMLNQTQS LKRPHIVIATPGRVKVLLEENPDI  VFSKTK +   EA+
Subjt:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
A0A6J1L281 DEAD-box ATP-dependent RNA helicase 364.4e-1770.24Show/hide
Query:  KLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKTSKQL
        +LI  IEANLGK+LEIFE KE E +EN +KVYKA  VA MKMVDDGFEEK KERK    K LAEKGLLK+RS++RR+EK SK+L
Subjt:  KLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERK----KTLAEKGLLKQRSKRRRKEKTSKQL
SwissProt top hitse value%identityAlignment
Q8L4E9 DEAD-box ATP-dependent RNA helicase 369.7e-0642.86Show/hide
Query:  DMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
        D L Q +   +RPH+V+ATPGR+  L+ ++PD+  VF++TK +   EA+
Subjt:  DMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
Q9SA27 DEAD-box ATP-dependent RNA helicase 362.2e-1064Show/hide
Query:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
        MDML QT S + RPHIVI TPGR+KVLLE NPD+  VFS+TK +   EA+
Subjt:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
Q9SA27 DEAD-box ATP-dependent RNA helicase 361.4e-0748.68Show/hide
Query:  KLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKER----KKTLAEKGLLKQRSKRRR
        KLI  IE  +GK++E +  K   +    +KV KA  VA MKM+D+GFE+K K+R    +KTLA+KGLLK+R KR++
Subjt:  KLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKER----KKTLAEKGLLKQRSKRRR
Arabidopsis top hitse value%identityAlignment
AT1G16280.1 RNA helicase 361.6e-1164Show/hide
Query:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
        MDML QT S + RPHIVI TPGR+KVLLE NPD+  VFS+TK +   EA+
Subjt:  MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEAN
AT1G16280.1 RNA helicase 369.6e-0948.68Show/hide
Query:  KLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKER----KKTLAEKGLLKQRSKRRR
        KLI  IE  +GK++E +  K   +    +KV KA  VA MKM+D+GFE+K K+R    +KTLA+KGLLK+R KR++
Subjt:  KLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKER----KKTLAEKGLLKQRSKRRR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGCTGAACCAGACGCAGAGTTCGCTGAAGAGGCCTCACATTGTAATTGCAACGCCGGGAAGGGTTAAGGTGTTGCTGGAGGAGAACCCTGATATCCATGTCGT
CTTTTCCAAGACTAAGCTTATTGATGCAATAGAGGCCAATCTTGGAAAGCAATTGGAGATTTTTGAATTCAAGGAGACTGAAGAGATTGAGAATGATTCAAAGGTTTACA
AGGCTAGTTATGTGGCAAAAATGAAGATGGTGGATGATGGATTTGAGGAGAAAGCGAAAGAACGAAAGAAAACATTGGCAGAGAAGGGACTATTGAAGCAAAGGAGCAAA
AGGAGAAGAAAAGAAAAAACTTCAAAGCAGTTGACAGTTGACAGTTGA
mRNA sequenceShow/hide mRNA sequence
TCCACAGAACTTGGCACTAAATTCGCCGACGATGTTGCATTTGCTAACCTCGGCTTGTCAGAAGCGATCGTACGGACTTGCGAAGAATTGGCTATGAAGAAGCCTACGGC
GGTTCAAACGCACTGTATCCCGAAGATTCTTGCTGGCCTCGACGTGCTTGGTATTGCCCAAACTGGGAGTGGGAAGACTGCTGCCTTTGCGTTGCCGATTCTTCAACGCC
TTTCCAATTGGCTGAGCAGTTTAGGGCACTTGGTTCCGGCTTGAACTTGCGGTGCTCAGTGGTTGTTGGAGGAATGGATATGCTGAACCAGACGCAGAGTTCGCTGAAGA
GGCCTCACATTGTAATTGCAACGCCGGGAAGGGTTAAGGTGTTGCTGGAGGAGAACCCTGATATCCATGTCGTCTTTTCCAAGACTAAGCTTATTGATGCAATAGAGGCC
AATCTTGGAAAGCAATTGGAGATTTTTGAATTCAAGGAGACTGAAGAGATTGAGAATGATTCAAAGGTTTACAAGGCTAGTTATGTGGCAAAAATGAAGATGGTGGATGA
TGGATTTGAGGAGAAAGCGAAAGAACGAAAGAAAACATTGGCAGAGAAGGGACTATTGAAGCAAAGGAGCAAAAGGAGAAGAAAAGAAAAAACTTCAAAGCAGTTGACAG
TTGACAGTTGAATAAGAATCTCACCTGCCATCATCAAAATTTTGATACTCCTTAATTTAGTGTACATGCGGG
Protein sequenceShow/hide protein sequence
MDMLNQTQSSLKRPHIVIATPGRVKVLLEENPDIHVVFSKTKLIDAIEANLGKQLEIFEFKETEEIENDSKVYKASYVAKMKMVDDGFEEKAKERKKTLAEKGLLKQRSK
RRRKEKTSKQLTVDS