CuGenDBv2

Gene ID	CmoCh20G003080
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L20
Genome location	Cmo_Chr20:1498706..1506143
RNA-Seq Expression	CmoCh20G003080
Synteny	CmoCh20G003080
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0054693.1 50S ribosomal protein L20 [Cucumis melo var. makuwa]

5.7e-26

93.94

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGLFVI
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG+  +
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGLFVI

KAE9606237.1 putative ribosomal protein L20 [Lupinus albus]

7.5e-26

98.41

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG+
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

KAE9614922.1 putative ribosomal protein L20 [Lupinus albus]

7.5e-26

98.41

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG+
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

KAF3448803.1 hypothetical protein FNV43_RR09516 [Rhamnella rubrinervis]

7.5e-26

98.41

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG+
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

KAG7035310.1 rplT, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.5e-26

98.41

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG+
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E159 50S ribosomal protein L20

3.6e-26

98.41

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG+
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

A0A444YEA4 50S ribosomal protein L20

3.6e-26

98.41

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG+
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

A0A5A7UFF4 50S ribosomal protein L20

2.8e-26

93.94

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGLFVI
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG+  +
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGLFVI

A0A6A4PX22 50S ribosomal protein L20

3.6e-26

98.41

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG+
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

A0A6J1JCG1 50S ribosomal protein L20

3.6e-26

98.41

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG+
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

SwissProt top hits

e value

%identity

Alignment

B3CLK2 50S ribosomal protein L20

9.2e-19

76.27

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        K+ KLAKG+RGRAKNC RIA +RVEKALQY+YRDRRN+KRD R LWI RINA  R HGL
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

B6IPJ8 50S ribosomal protein L20

1.8e-19

76.27

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHGL
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

C3PP50 50S ribosomal protein L20

1.6e-18

74.58

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        KI KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA  R HGL
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

Q92H37 50S ribosomal protein L20

1.6e-18

74.58

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        KI KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA  R HGL
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

Q9ZCV0 50S ribosomal protein L20

1.2e-18

74.58

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        KI KLAKG+RGRA NC R+A E+VEK LQY+YRDRRN+KRD R LWIQRINA  R HGL
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

3.6e-26

87.3

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R HG+
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGL

ATCG00660.1 ribosomal protein L20

2.9e-04

38.71

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Query:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGLF
        + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     G+F
Subjt:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGLF

Sequences

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CDS sequence

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ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCAGAGGTAGGGCTAAGAATTGCATAAGGATTGCCAGAGAGAGGGTGGAGAAGGCTCTTCAGTATTCCTACAG
GGACCGTCGGAATAAGAAACGGGACATGCGCTCCCTTTGGATACAACGTATCAATGCTGGCACGCGCCTTCATGGGTTATTTGTCATTAAGTGA

mRNA sequence

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CACTCTCACGTGCTCCACCTTCTTCTTCTCCTTCTTCCCGCCGTCTTCTCTTCCCTTTCAGCAGCTCAGCGTCGCCGCTGCCGTCTCTCTTCCGCTTGTACCACCGAAAC
CTCCCTTCTAACAGGTGCAGAGCATAGCAAGGAAAAAAGATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCAGAGGTAGGGCTAAGAATTGCATAAGGATTGC
CAGAGAGAGGGTGGAGAAGGCTCTTCAGTATTCCTACAGGGACCGTCGGAATAAGAAACGGGACATGCGCTCCCTTTGGATACAACGTATCAATGCTGGCACGCGCCTTC
ATGGGTTATTTGTCATTAAGTGA

Protein sequence

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MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGLFVIK

CmoCh20G003080 (gene) of Cucurbita moschata (Rifu) v1 genome