; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh20G003510 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G003510
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSWR1 complex subunit 6
Genome locationCmo_Chr20:1727921..1731137
RNA-Seq ExpressionCmoCh20G003510
SyntenyCmoCh20G003510
Gene Ontology termsGO:0043486 - histone exchange (biological process)
GO:0000812 - Swr1 complex (cellular component)
GO:0031491 - nucleosome binding (molecular function)
InterPro domainsIPR007529 - Zinc finger, HIT-type
IPR039723 - Vps71/ZNHIT1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010486.1 SWR1 complex subunit 6, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-86100Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
        ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA

XP_022943643.1 SWR1 complex subunit 6 [Cucurbita moschata]1.5e-86100Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
        ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA

XP_022986949.1 SWR1 complex subunit 6 [Cucurbita maxima]2.5e-8699.42Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
        ELLHEASLESLPPHVPSY+KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA

XP_023512985.1 SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo]1.5e-86100Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
        ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA

XP_038901863.1 SWR1 complex subunit 6 [Benincasa hispida]1.5e-8395.35Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATN FRRMSSR RKVAPKMVAALASSDNR+QAALARLEALENDNAG+E +ENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
        ELLHEA+LESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA

TrEMBL top hitse value%identityAlignment
A0A0A0KH15 HIT-type domain-containing protein5.9e-8193.6Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDEDASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
        ELLHEA+LESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA

A0A1S3CKL9 SWR1 complex subunit 61.3e-8093.02Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDEDASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
        ELLHEA+LESLPPHVPSY KAAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA

A0A6J1D2Z0 SWR1 complex subunit 6 isoform X18.2e-8394.19Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENIDDEDASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
        ELLHEA+LESLPP+VPSYLKAAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA

A0A6J1FTL5 SWR1 complex subunit 67.2e-87100Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
        ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA

A0A6J1JHH9 SWR1 complex subunit 61.2e-8699.42Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
        ELLHEASLESLPPHVPSY+KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA

SwissProt top hitse value%identityAlignment
O43257 Zinc finger HIT domain-containing protein 16.6e-1339.42Show/hide
Query:  RLEALENDN------AGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLKAAVGPPSSTSRRH
        +LEALENDN      AGL     +       DDD     +K++++G   K R           K F  LL E +L       P+YL A  GPP S  +R 
Subjt:  RLEALENDN------AGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLKAAVGPPSSTSRRH

Query:  FCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKF
        FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Subjt:  FCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKF

Q24JY4 Zinc finger HIT domain-containing protein 16.6e-1339.42Show/hide
Query:  RLEALENDN------AGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLKAAVGPPSSTSRRH
        +LEALENDN      AGL     +       DDD     +K++++G   K R           K F  LL E +L       P+YL A  GPP S  +R 
Subjt:  RLEALENDN------AGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLKAAVGPPSSTSRRH

Query:  FCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKF
        FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Subjt:  FCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKF

Q54NW0 Zinc finger HIT domain-containing protein 1 homolog1.2e-1433.96Show/hide
Query:  SSRTRKVAPKMVAALASSDNRS---QAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQ-SKGTKRKTRQAKALEAKKAPKTFMELLHEASL
        SS+ +    K     +  D R+   +   ARLE+L++DN    +    D+ED   +DDE   +     +K      R+ K  E K     F ++L ++ L
Subjt:  SSRTRKVAPKMVAALASSDNRS---QAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQ-SKGTKRKTRQAKALEAKKAPKTFMELLHEASL

Query:  ESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRC
        E+ P HVP+Y+ +    PS    RHFC++CG+  +YTC +C  R+CS +C N HN+TRC
Subjt:  ESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRC

Q8R331 Zinc finger HIT domain-containing protein 13.0e-1339.42Show/hide
Query:  RLEALENDN------AGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLKAAVGPPSSTSRRH
        +LEALENDN      AGL     +       DDD     +K++++G   K R           K F  LL E +L +     P+YL A  GPP S  +R 
Subjt:  RLEALENDN------AGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLKAAVGPPSSTSRRH

Query:  FCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKF
        FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Subjt:  FCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKF

Q9FHW2 SWR1 complex subunit 64.2e-6070.52Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLD-DDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTF
        M+++ +N  RR+S+RTRKVA KM AAL S+DNR+QAA+ARLEALENDN  +E+I+  DDE+ASLD DD+  Y+QK+Q KG+KRKTRQAKALEA+KAPK+F
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLD-DDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTF

Query:  MELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
        +ELL EA+LESLP HVP+YLKAAVGPPSS+SRR+FC+VCG+ A Y C  CG+RFCS RCQNIH DTRC KFVA
Subjt:  MELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA

Arabidopsis top hitse value%identityAlignment
AT5G37055.1 HIT-type Zinc finger family protein3.0e-6170.52Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLD-DDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTF
        M+++ +N  RR+S+RTRKVA KM AAL S+DNR+QAA+ARLEALENDN  +E+I+  DDE+ASLD DD+  Y+QK+Q KG+KRKTRQAKALEA+KAPK+F
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLD-DDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTF

Query:  MELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA
        +ELL EA+LESLP HVP+YLKAAVGPPSS+SRR+FC+VCG+ A Y C  CG+RFCS RCQNIH DTRC KFVA
Subjt:  MELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATGATGCTACAAATTCATTCCGACGCATGTCGAGTCGCACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCGAGCAGCGACAATCGTTCTCAGGCTGC
CCTTGCTCGTCTCGAGGCGTTGGAAAATGACAACGCTGGACTGGAATTGATCGAAAACATTGACGACGAGGATGCTTCTCTCGATGATGACGAACAAGCATACATACAAA
AGCGGCAATCAAAAGGCACCAAGCGCAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAGGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGGCAAGTTTGGAGTCT
TTGCCTCCACATGTTCCATCGTACTTGAAGGCAGCCGTCGGACCTCCAAGCTCTACCTCCCGCCGGCATTTCTGCACGGTTTGTGGTTTTGCTGCTAGCTACACGTGCAT
AAGGTGTGGAGTACGCTTTTGTTCATGTCGTTGCCAGAATATACATAATGATACTCGTTGCTTGAAATTTGTTGCCTGA
mRNA sequenceShow/hide mRNA sequence
TTCGCCTGTTAACTCCACGGTGGATTTGGTTCTCGGAATGTCGTCGGCGTAAAATTCCTGCATAAGTTTGGACTGTCGCCGGTGTTGAGAACGGTGAACATTCACCGGAA
GTCCATCGACTCGCATTACGCCTTTCCTCTTCTTCTCCGGGTGGTAGGGTTGGAACTCTCTCTCTCTTTCGCTCATTTCTGATTCGTTGTCACAGTGTACATTACGATCG
AGTTGATACCGTCATTCGAAACAGTGCTTTTAACCAATTTCGTAGGGCTGGAATTAAGGATCATGCGAAACGATCTGAGTGTCCGTTTGTAGCTAGCAATGGATGATGAT
GCTACAAATTCATTCCGACGCATGTCGAGTCGCACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCGAGCAGCGACAATCGTTCTCAGGCTGCCCTTGCTCGTCT
CGAGGCGTTGGAAAATGACAACGCTGGACTGGAATTGATCGAAAACATTGACGACGAGGATGCTTCTCTCGATGATGACGAACAAGCATACATACAAAAGCGGCAATCAA
AAGGCACCAAGCGCAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAGGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGGCAAGTTTGGAGTCTTTGCCTCCACAT
GTTCCATCGTACTTGAAGGCAGCCGTCGGACCTCCAAGCTCTACCTCCCGCCGGCATTTCTGCACGGTTTGTGGTTTTGCTGCTAGCTACACGTGCATAAGGTGTGGAGT
ACGCTTTTGTTCATGTCGTTGCCAGAATATACATAATGATACTCGTTGCTTGAAATTTGTTGCCTGATATAGGTGGGCGGATTAAAGCCACCCGAGTTTTGTCGATTCCG
TTTAACTCACTAATATCTCCGTTAATTACAATGTAGTTTTAATGTTTTTTTTTCATGGATTATTTTTATTAGTTTGTTTGGAATCACTTTCAAATTACTTTGAAAAAAAA
AGTTTTTAAGCCGCC
Protein sequenceShow/hide protein sequence
MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLES
LPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA