; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh20G003540 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G003540
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLOB domain-containing protein
Genome locationCmo_Chr20:1742608..1743104
RNA-Seq ExpressionCmoCh20G003540
SyntenyCmoCh20G003540
Gene Ontology termsNA
InterPro domainsIPR004883 - Lateral organ boundaries, LOB


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010488.1 Glucan endo-1,3-beta-glucosidase 9 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-6495.49Show/hide
Query:  SSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVH
        +SSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAE  
Subjt:  SSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVH

Query:  AEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN
        AEILSFQMQQP+APMTFPTTQMDQS MFEHS N
Subjt:  AEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN

XP_022944623.1 LOB domain-containing protein 12-like isoform X1 [Cucurbita moschata]6.5e-6999.27Show/hide
Query:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL
        MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL
Subjt:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL

Query:  AEVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN
        AEVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN
Subjt:  AEVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN

XP_022944626.1 LOB domain-containing protein 12-like isoform X2 [Cucurbita moschata]2.6e-70100Show/hide
Query:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLA
        MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLA
Subjt:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLA

Query:  EVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN
        EVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN
Subjt:  EVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN

XP_023512989.1 LOB domain-containing protein 12-like isoform X1 [Cucurbita pepo subsp. pepo]1.5e-6596.35Show/hide
Query:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL
        MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQL+MQL
Subjt:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL

Query:  AEVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN
        AEV AEILSFQMQQPVAPMTFPTTQMDQS MFEHS N
Subjt:  AEVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN

XP_023512990.1 LOB domain-containing protein 12-like isoform X2 [Cucurbita pepo subsp. pepo]1.5e-6596.35Show/hide
Query:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL
        MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQL+MQL
Subjt:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL

Query:  AEVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN
        AEV AEILSFQMQQPVAPMTFPTTQMDQS MFEHS N
Subjt:  AEVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN

TrEMBL top hitse value%identityAlignment
A0A6J1FUX5 LOB domain-containing protein 12-like isoform X21.3e-70100Show/hide
Query:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLA
        MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLA
Subjt:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLA

Query:  EVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN
        EVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN
Subjt:  EVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN

A0A6J1FX16 LOB domain-containing protein 12-like isoform X13.1e-6999.27Show/hide
Query:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL
        MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL
Subjt:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL

Query:  AEVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN
        AEVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN
Subjt:  AEVHAEILSFQMQQPVAPMTFPTTQMDQSCMFEHSRN

A0A6J1G7F7 LOB domain-containing protein 12-like1.8e-4878.91Show/hide
Query:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL
        M A SSPCASCKLLRRRC KDCIFAPYFPP+DP KFAIVHKIFGASNVSKMLQ + +DQR D V+S+VYEA+ARMRDPVYGCVG I+FLQN+VS+LEMQL
Subjt:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL

Query:  AEVHAEILSFQMQQPVAPMTFPTTQMDQ
        A   AEILSFQMQQ  AP +FP TQM+Q
Subjt:  AEVHAEILSFQMQQPVAPMTFPTTQMDQ

A0A6J1JI23 LOB domain-containing protein 12-like4.0e-5687.79Show/hide
Query:  SSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVH
        SSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFG SNV KMLQ +SVDQRA+TV+SIVYEANARMRDPVYG VGIISFLQN+V QLEMQLAE  
Subjt:  SSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVH

Query:  AEILSFQMQQPVAPMTFPTTQMDQSCMFEHS
        AEILSFQMQQPVAPMTF TT++DQS MFE+S
Subjt:  AEILSFQMQQPVAPMTFPTTQMDQSCMFEHS

A0A6J1L5Y7 LOB domain-containing protein 12-like8.9e-4878.12Show/hide
Query:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL
        M A SSPCASCKLLRRRC KDCIFAPYFPP+DP KFAIVHKIFGASNVSKMLQ + +DQR D V+S+VYEA+ARMRDPVYGCVG I+FLQN+VS+LEMQL
Subjt:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL

Query:  AEVHAEILSFQMQQPVAPMTFPTTQMDQ
        A   AEILSFQMQQ  A  +FP TQM+Q
Subjt:  AEVHAEILSFQMQQPVAPMTFPTTQMDQ

SwissProt top hitse value%identityAlignment
Q8L5T5 LOB domain-containing protein 157.0e-3457.63Show/hide
Query:  SPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKML-QVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVHA
        +PCA+CKLLRRRC ++C F+PYF P++P KFA VHK+FGASNVSKML +V   QRAD  +S+VYEAN R+RDPVYGC+G IS LQ +V  L+ +L  V +
Subjt:  SPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKML-QVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVHA

Query:  EILSFQMQQPVAPMTFPT
        EIL ++ ++ VA +  P+
Subjt:  EILSFQMQQPVAPMTFPT

Q8L8Q3 LOB domain-containing protein 253.5e-3359.81Show/hide
Query:  SSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKML-QVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEV
        ++SPCA+CK LRR+CT DC+FAPYFPP +P KFA VH+IFGASNVSK+L +V+  QR D V+S+ YEA AR++DPVYGCVG IS LQ +V +L+ +L E 
Subjt:  SSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKML-QVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEV

Query:  HAEILSF
        +A+++ +
Subjt:  HAEILSF

Q8LBW3 LOB domain-containing protein 121.3e-4372Show/hide
Query:  SSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVH
        SSPCASCKLLRRRC KDCIFAPYFPP+DP KFAIVHK+FGASNVSKMLQ + V QRAD V+S+V+EANAR+RDPVYGCVG IS+LQN+VSQL+MQLA   
Subjt:  SSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVH

Query:  AEILSFQMQ-QPVAPMTFPTTQMDQ
        AEIL  QMQ +P         ++DQ
Subjt:  AEILSFQMQ-QPVAPMTFPTTQMDQ

Q9FKZ3 LOB domain-containing protein 361.2e-3354.1Show/hide
Query:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKML-QVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL
        M +SSSPCA+CK LRR+CT++C+FAPYFPP+ P KFA VHK+FGASNV+K+L +++ +QR D V+S+ YEA AR+RDPVYGCVG+IS LQ+ + Q+   L
Subjt:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKML-QVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL

Query:  AEVHAEILSFQMQQPVAPMTFP
             E+ ++   Q + P+  P
Subjt:  AEVHAEILSFQMQQPVAPMTFP

Q9SHE9 LOB domain-containing protein 41.1e-3460.18Show/hide
Query:  EASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLA
        + ++SPCA+CKLLRRRC +DC+F+PYFP ++P KFA VH++FGASNV+KMLQ + + QR D VSS+VYEANAR+RDPVYGCVG IS LQ ++  L+ QLA
Subjt:  EASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLA

Query:  EVHAEILSFQMQQ
           AE++  +++Q
Subjt:  EVHAEILSFQMQQ

Arabidopsis top hitse value%identityAlignment
AT1G31320.1 LOB domain-containing protein 47.7e-3660.18Show/hide
Query:  EASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLA
        + ++SPCA+CKLLRRRC +DC+F+PYFP ++P KFA VH++FGASNV+KMLQ + + QR D VSS+VYEANAR+RDPVYGCVG IS LQ ++  L+ QLA
Subjt:  EASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLA

Query:  EVHAEILSFQMQQ
           AE++  +++Q
Subjt:  EVHAEILSFQMQQ

AT2G30130.1 Lateral organ boundaries (LOB) domain family protein9.1e-4572Show/hide
Query:  SSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVH
        SSPCASCKLLRRRC KDCIFAPYFPP+DP KFAIVHK+FGASNVSKMLQ + V QRAD V+S+V+EANAR+RDPVYGCVG IS+LQN+VSQL+MQLA   
Subjt:  SSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQ-VSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVH

Query:  AEILSFQMQ-QPVAPMTFPTTQMDQ
        AEIL  QMQ +P         ++DQ
Subjt:  AEILSFQMQ-QPVAPMTFPTTQMDQ

AT2G40470.1 LOB domain-containing protein 155.0e-3557.63Show/hide
Query:  SPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKML-QVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVHA
        +PCA+CKLLRRRC ++C F+PYF P++P KFA VHK+FGASNVSKML +V   QRAD  +S+VYEAN R+RDPVYGC+G IS LQ +V  L+ +L  V +
Subjt:  SPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKML-QVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVHA

Query:  EILSFQMQQPVAPMTFPT
        EIL ++ ++ VA +  P+
Subjt:  EILSFQMQQPVAPMTFPT

AT3G27650.1 LOB domain-containing protein 252.5e-3459.81Show/hide
Query:  SSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKML-QVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEV
        ++SPCA+CK LRR+CT DC+FAPYFPP +P KFA VH+IFGASNVSK+L +V+  QR D V+S+ YEA AR++DPVYGCVG IS LQ +V +L+ +L E 
Subjt:  SSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKML-QVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEV

Query:  HAEILSF
        +A+++ +
Subjt:  HAEILSF

AT5G66870.1 ASYMMETRIC LEAVES 2-like 18.5e-3554.1Show/hide
Query:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKML-QVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL
        M +SSSPCA+CK LRR+CT++C+FAPYFPP+ P KFA VHK+FGASNV+K+L +++ +QR D V+S+ YEA AR+RDPVYGCVG+IS LQ+ + Q+   L
Subjt:  MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKML-QVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQL

Query:  AEVHAEILSFQMQQPVAPMTFP
             E+ ++   Q + P+  P
Subjt:  AEVHAEILSFQMQQPVAPMTFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCCAGTTCATCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGCTGCACAAAGGACTGCATTTTTGCCCCATATTTCCCTCCCAATGACCCTCTCAAGTTTGC
CATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGTCTCAGTTGATCAGAGAGCGGATACTGTGAGTAGTATAGTATATGAAGCAAATGCTAGAA
TGCGAGATCCAGTGTACGGATGTGTAGGAATAATCTCATTTCTGCAAAATGAAGTGTCCCAATTGGAAATGCAACTAGCAGAAGTACATGCGGAGATCTTAAGCTTTCAG
ATGCAGCAACCAGTGGCTCCAATGACATTCCCGACAACCCAAATGGATCAGAGTTGCATGTTTGAACATTCAAGAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCCAGTTCATCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGCTGCACAAAGGACTGCATTTTTGCCCCATATTTCCCTCCCAATGACCCTCTCAAGTTTGC
CATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGTCTCAGTTGATCAGAGAGCGGATACTGTGAGTAGTATAGTATATGAAGCAAATGCTAGAA
TGCGAGATCCAGTGTACGGATGTGTAGGAATAATCTCATTTCTGCAAAATGAAGTGTCCCAATTGGAAATGCAACTAGCAGAAGTACATGCGGAGATCTTAAGCTTTCAG
ATGCAGCAACCAGTGGCTCCAATGACATTCCCGACAACCCAAATGGATCAGAGTTGCATGTTTGAACATTCAAGAAATTAA
Protein sequenceShow/hide protein sequence
MEASSSPCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLEMQLAEVHAEILSFQ
MQQPVAPMTFPTTQMDQSCMFEHSRN