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CmoCh20G004060 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G004060
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMitochondrial 28S Ribosomal protein
Genome locationCmo_Chr20:1936692..1938336
RNA-Seq ExpressionCmoCh20G004060
SyntenyCmoCh20G004060
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR032053 - Mitochondrial 28S ribosomal protein S34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143137.1 uncharacterized protein LOC101207989 [Cucumis sativus]3.4e-6082.07Show/hide
Query:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG
        M+VANR+AIS AL FSRLSSSF R+F++SSPS S+ NPNA   S++TKRRKKKKNLFEVVQFLPNWGVGYHVAK+HWDEISYQITK+NLYKSGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG

Query:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS
        +AHK+GT I EAPKKISGVHKRCWKYIASLP SG+S  SAEVQTS
Subjt:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS

XP_008464074.1 PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo]1.0e-5981.38Show/hide
Query:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG
        M+VANR+AIS AL FSRLSSSF R+FT+SSPS S+ NPNA  +S++TKRRKKKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITK+NLYKSGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG

Query:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS
        +AHK+G  I EAPKKISGVHKRCWKYIASLPR G+S  SAEVQTS
Subjt:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS

XP_022148301.1 uncharacterized protein LOC111016988 [Momordica charantia]9.7e-5574.03Show/hide
Query:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG
        MSVANR+AI+ AL FS+LSS+F R+F+TSSPS S+ NPNA  AS+  KRRKKKKNLFEVVQFLP WGVGYHVAKAHWDEISYQITK+NLYK+G HGKAWG
Subjt:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG

Query:  VAHKDGTRIAEAPKKISGVHKRCWKYIASL---------PRSGDSDPSAEVQTS
        +AHKDG  IAEAPKKISGVHKRCW+YIA L          +S +S+PSAEVQTS
Subjt:  VAHKDGTRIAEAPKKISGVHKRCWKYIASL---------PRSGDSDPSAEVQTS

XP_022944512.1 uncharacterized protein LOC111448948 [Cucurbita moschata]2.2e-75100Show/hide
Query:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG
        MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG

Query:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS
        VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS
Subjt:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]6.7e-6487.41Show/hide
Query:  VANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWGVA
        VANR+AIS AL FSRLSS+F R+F+TSSPS S+ NPNA TASTK KRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITK+NLYK+GTHGKAWG+A
Subjt:  VANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWGVA

Query:  HKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS
        HKDGT IAEAPKKISGVHKRCWKYIASLPRSG+S+PSAEVQTS
Subjt:  HKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS

TrEMBL top hitse value%identityAlignment
A0A0A0KH76 Uncharacterized protein1.7e-6082.07Show/hide
Query:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG
        M+VANR+AIS AL FSRLSSSF R+F++SSPS S+ NPNA   S++TKRRKKKKNLFEVVQFLPNWGVGYHVAK+HWDEISYQITK+NLYKSGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG

Query:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS
        +AHK+GT I EAPKKISGVHKRCWKYIASLP SG+S  SAEVQTS
Subjt:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS

A0A1S3CKN2 uncharacterized protein LOC1035020494.8e-6081.38Show/hide
Query:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG
        M+VANR+AIS AL FSRLSSSF R+FT+SSPS S+ NPNA  +S++TKRRKKKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITK+NLYKSGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG

Query:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS
        +AHK+G  I EAPKKISGVHKRCWKYIASLPR G+S  SAEVQTS
Subjt:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS

A0A5A7V0Y6 Uncharacterized protein4.8e-6081.38Show/hide
Query:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG
        M+VANR+AIS AL FSRLSSSF R+FT+SSPS S+ NPNA  +S++TKRRKKKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITK+NLYKSGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG

Query:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS
        +AHK+G  I EAPKKISGVHKRCWKYIASLPR G+S  SAEVQTS
Subjt:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS

A0A6J1D4Z3 uncharacterized protein LOC1110169884.7e-5574.03Show/hide
Query:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG
        MSVANR+AI+ AL FS+LSS+F R+F+TSSPS S+ NPNA  AS+  KRRKKKKNLFEVVQFLP WGVGYHVAKAHWDEISYQITK+NLYK+G HGKAWG
Subjt:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG

Query:  VAHKDGTRIAEAPKKISGVHKRCWKYIASL---------PRSGDSDPSAEVQTS
        +AHKDG  IAEAPKKISGVHKRCW+YIA L          +S +S+PSAEVQTS
Subjt:  VAHKDGTRIAEAPKKISGVHKRCWKYIASL---------PRSGDSDPSAEVQTS

A0A6J1FVV3 uncharacterized protein LOC1114489481.1e-75100Show/hide
Query:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG
        MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWG

Query:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS
        VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS
Subjt:  VAHKDGTRIAEAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52370.1 unknown protein6.5e-4160.47Show/hide
Query:  RLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWGVAHKDGTRIAEAPKKI
        RLS +  R+F   S +P++ NP++ ++  K   R+KKKNL EV QFLPNWG+GYH+AKAHW+ ISY+ITK+NLYK G HGKAWG+ HKDG R AEAPKKI
Subjt:  RLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWGVAHKDGTRIAEAPKKI

Query:  SGVHKRCWKYIASLPRSGDSDPSAEVQTS
        SGVHKRCWKYI +L ++  +  SA VQ +
Subjt:  SGVHKRCWKYIASLPRSGDSDPSAEVQTS

AT5G58990.1 unknown protein1.0e-4159.38Show/hide
Query:  LSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWGVAHKDGTRIAEAPKKIS
        LS S  R+F+ +  + STP    P++ +   +R+KKKNL EV QFLPNWG+GYH+AKAHW+ ISY+ITK+NLYK G HGKAWG+ HKDG R AEAPKKIS
Subjt:  LSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWGVAHKDGTRIAEAPKKIS

Query:  GVHKRCWKYIASLPRSGDSDPSAEVQTS
        GVHKRCWKYI +L ++  +  +A+VQ +
Subjt:  GVHKRCWKYIASLPRSGDSDPSAEVQTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTCGCCAACAGAAGTGCGATCAGTGGAGCCCTACATTTCTCCCGGTTATCTTCTTCCTTTACCAGAAGCTTCACCACCTCTTCGCCGTCTCCCTCCACTCCGAA
CCCCAATGCCCCGACTGCTTCGACTAAAACCAAGCGGAGGAAGAAGAAGAAGAACCTGTTCGAAGTAGTTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCGCCA
AGGCTCATTGGGATGAAATATCGTACCAGATCACCAAATTAAATCTGTACAAGAGTGGCACGCATGGCAAGGCATGGGGCGTTGCTCATAAAGATGGTACGCGTATCGCA
GAAGCTCCGAAGAAGATCAGTGGCGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTACCGCGTTCGGGAGACAGCGACCCATCAGCTGAAGTTCAAACTTCATGA
mRNA sequenceShow/hide mRNA sequence
GCAAAGCTAGAGAGAGACTCCAATGTCTGTCGCCAACAGAAGTGCGATCAGTGGAGCCCTACATTTCTCCCGGTTATCTTCTTCCTTTACCAGAAGCTTCACCACCTCTT
CGCCGTCTCCCTCCACTCCGAACCCCAATGCCCCGACTGCTTCGACTAAAACCAAGCGGAGGAAGAAGAAGAAGAACCTGTTCGAAGTAGTTCAGTTTTTGCCCAATTGG
GGAGTAGGATACCATGTCGCCAAGGCTCATTGGGATGAAATATCGTACCAGATCACCAAATTAAATCTGTACAAGAGTGGCACGCATGGCAAGGCATGGGGCGTTGCTCA
TAAAGATGGTACGCGTATCGCAGAAGCTCCGAAGAAGATCAGTGGCGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTACCGCGTTCGGGAGACAGCGACCCATCAG
CTGAAGTTCAAACTTCATGACTGCAGATTACAGTCCTTAAATATAGTCAGGTTTCTTAACTTCGTTATATGAGGGGCATTCTGTGATTTTATTGTTGAATAGAGGTTTAA
GAATCTGGTTGATATTTGTGAATCAGTGTTTTTGTCCTGCTCCTGCTGTGAGATGAATACAATAATGTTTCCTTTTTTAAACGTGGAAAGTGTCGAAGAGTTCATTTG
Protein sequenceShow/hide protein sequence
MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWGVAHKDGTRIA
EAPKKISGVHKRCWKYIASLPRSGDSDPSAEVQTS